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{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_016CdcNiJL5enkBXBPG1tkjQ","type":"message","role":"assistant","content":[{"type":"thinking","thinking":"Interesting. The task plan directory contains CLAUDE.md, README.md, docs, tasks. Let me check what's there more carefully. It seems like the `/plan/` directory in the task dir has the actual project files, not task JSON files. And the worktree is an AGENTS.md project (agent-core-artefacts repo).\n\nLet me look at both directories more carefully.","signature":"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"}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":274,"cache_read_input_tokens":24535,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":274},"output_tokens":37,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"73db312d-ba8f-4b32-a8c8-b8be2c8e8d41"}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01JBx9oXr3m3veg2CGFUiUgu","type":"tool_result","content":"/home/agent/AgentSDE/tasks/production/AgentSDE/agent-core-artefacts/gh-611/meta/ai-output.jsonl\n/home/agent/AgentSDE/tasks/production/AgentSDE/agent-core-artefacts/gh-611/meta/ai-stderr.log\n/home/agent/AgentSDE/tasks/production/AgentSDE/agent-core-artefacts/gh-611/meta/ai.pid\n---\nCLAUDE.md\nREADME.md\ndocs\ntasks","is_error":false}]},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"1f599493-73fe-4721-bfdd-d6c971ed04d1","timestamp":"2026-04-24T15:15:49.459Z","tool_use_result":{"stdout":"/home/agent/AgentSDE/tasks/production/AgentSDE/agent-core-artefacts/gh-611/meta/ai-output.jsonl\n/home/agent/AgentSDE/tasks/production/AgentSDE/agent-core-artefacts/gh-611/meta/ai-stderr.log\n/home/agent/AgentSDE/tasks/production/AgentSDE/agent-core-artefacts/gh-611/meta/ai.pid\n---\nCLAUDE.md\nREADME.md\ndocs\ntasks","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}}
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{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01XXzJjbZcp2z3JNogTgEhwD","type":"message","role":"assistant","content":[{"type":"thinking","thinking":"This looks like the output was from a previous compound learnings run that encountered missing files. Let me check the GitHub issue and PR to understand what was actually done in issue #611.","signature":"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"}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":1841,"cache_read_input_tokens":25205,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":1841},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"f0ac7b04-a6a8-4495-b06e-329701d6b6d4"}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01XXzJjbZcp2z3JNogTgEhwD","type":"message","role":"assistant","content":[{"type":"text","text":"Let me fetch the GitHub issue and PR to understand what was done."}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":1841,"cache_read_input_tokens":25205,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":1841},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"34434e50-7795-466b-89f4-b8fb7b1710bf"}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01DvcHUAPi5xCBafMAjtXj2m","type":"tool_result","content":"title:\tdocs: SM-0A inventory of gh call sites (#611)\nstate:\tMERGED\nauthor:\tzhfahan77\nlabels:\t\nassignees:\t\nreviewers:\t\nprojects:\t\nmilestone:\t\nnumber:\t822\nurl:\thttps://github.com/AgentSDE/agent-core-artefacts/pull/822\nadditions:\t158\ndeletions:\t0\nauto-merge:\tdisabled\n--\n## Summary\nInventory of every `gh` CLI invocation in agent-core skills and agent-core-e2e, mapped to the 20 MCP tools in the plan.\n\nPart of EPIC #610. Closes #611.\n\n## Test plan\n- [ ] Count matches plan baseline (~84 calls / 14 skills)\n- [ ] Every call site has either a tool mapping or GAP note\n- [ ] GAPs reviewed before Wave 1 starts\n\n🤖 Generated with [Claude Code](https://claude.com/claude-code)\nShell cwd was reset to /home/agent/AgentSDE/agent-core","is_error":false}]},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"9d879bc2-0de8-49d5-a9f7-4cab0b59694b","timestamp":"2026-04-24T15:16:00.721Z","tool_use_result":{"stdout":"title:\tdocs: SM-0A inventory of gh call sites (#611)\nstate:\tMERGED\nauthor:\tzhfahan77\nlabels:\t\nassignees:\t\nreviewers:\t\nprojects:\t\nmilestone:\t\nnumber:\t822\nurl:\thttps://github.com/AgentSDE/agent-core-artefacts/pull/822\nadditions:\t158\ndeletions:\t0\nauto-merge:\tdisabled\n--\n## Summary\nInventory of every `gh` CLI invocation in agent-core skills and agent-core-e2e, mapped to the 20 MCP tools in the plan.\n\nPart of EPIC #610. Closes #611.\n\n## Test plan\n- [ ] Count matches plan baseline (~84 calls / 14 skills)\n- [ ] Every call site has either a tool mapping or GAP note\n- [ ] GAPs reviewed before Wave 1 starts\n\n🤖 Generated with [Claude Code](https://claude.com/claude-code)","stderr":"\nShell cwd was reset to /home/agent/AgentSDE/agent-core","interrupted":false,"isImage":false,"noOutputExpected":false}}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01EdKLu5NGEw4q3eBdFa7g67","type":"tool_result","content":"1\t# Claude Instructions — agent-core-artefacts\n2\t\n3\t> This file is living documentation. The directory structure may evolve as new artefact types are added.\n4\t\n5\t## What this repo is\n6\t\n7\t`agent-core-artefacts` is a **document and artefact storage repository** for the AgentSDE automation pipeline. It stores architecture docs, ARDs, RFCs, planning docs, test cases, and per-issue task files produced or consumed by pipeline agents.\n8\t\n9\tThis is **not a service** — there is no runtime, no server, and no deployable code.\n10\t\n11\t## Directory structure\n12\t\n13\t```\n14\tagent-core-artefacts/\n15\t├── docs/                          # Persistent reference documents\n16\t│   ├── arch/                      # Architecture overviews and diagrams\n17\t│   ├── ard/                       # Architectural Record Documents\n18\t│   ├── rfc/                       # Request for Comments proposals\n19\t│   ├── planning/                  # Planning and initiative docs\n20\t│   ├── test-cases/                # Shared test case specifications\n21\t│   └── testing/                   # Testing strategies and reports\n22\t└── tasks/                         # Per-issue task artefacts\n23\t    ├── production/                # Production pipeline tasks\n24\t    │   └── <org>/                 # GitHub org (e.g. AgentSDE)\n25\t    │       └── <repo>/            # GitHub repo (e.g. agent-core)\n26\t    │           └── gh-<N>/        # Per-issue task directory\n27\t    │               ├── plan/      # plan.md, context.json, prd.json\n28\t    │               ├── meta/      # task.json and pipeline metadata\n29\t    │               ├── input/     # Optional: input artefacts for the task\n30\t    │               └── changes/   # Optional: output artefacts (pr_description.md, etc.)\n31\t    └── e2e/                       # E2E pipeline tasks (same structure as production)\n32\t```\n33\t\n34\t## Naming conventions\n35\t\n36\t- Task directories follow the pattern `gh-<issue-number>` (e.g. `gh-42`).\n37\t- Tasks are grouped by environment (`production` / `e2e`), then by GitHub org, then by repo.\n38\t- Example path: `tasks/production/AgentSDE/agent-core/gh-130/`\n39\t\n40\t## Dev workflow\n41\t\n42\t**There is no build system in this repo.** There is no `package.json`, no `Makefile`, and no build, test, or lint commands. All content is Markdown, JSON, or plain text.\n43\t\n44\t## Branch & PR rules\n45\t\n46\t- Branch name: `feat/<issue-number>-<short-slug>` or `fix/<issue-number>-<short-slug>`\n47\t- PR body must include `Closes #<issue-number>`\n48\t- Never commit directly to `master`\n49\t"}]},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"240a8fd8-c81c-42a7-9ad2-502a52e2c3ff","timestamp":"2026-04-24T15:16:12.929Z","tool_use_result":{"type":"text","file":{"filePath":"/home/agent/ai-agents-sde/.claude/worktrees/agent-core-artefacts/issue-611-agents-md/CLAUDE.md","content":"# Claude Instructions — agent-core-artefacts\n\n> This file is living documentation. The directory structure may evolve as new artefact types are added.\n\n## What this repo is\n\n`agent-core-artefacts` is a **document and artefact storage repository** for the AgentSDE automation pipeline. It stores architecture docs, ARDs, RFCs, planning docs, test cases, and per-issue task files produced or consumed by pipeline agents.\n\nThis is **not a service** — there is no runtime, no server, and no deployable code.\n\n## Directory structure\n\n```\nagent-core-artefacts/\n├── docs/                          # Persistent reference documents\n│   ├── arch/                      # Architecture overviews and diagrams\n│   ├── ard/                       # Architectural Record Documents\n│   ├── rfc/                       # Request for Comments proposals\n│   ├── planning/                  # Planning and initiative docs\n│   ├── test-cases/                # Shared test case specifications\n│   └── testing/                   # Testing strategies and reports\n└── tasks/                         # Per-issue task artefacts\n    ├── production/                # Production pipeline tasks\n    │   └── <org>/                 # GitHub org (e.g. AgentSDE)\n    │       └── <repo>/            # GitHub repo (e.g. agent-core)\n    │           └── gh-<N>/        # Per-issue task directory\n    │               ├── plan/      # plan.md, context.json, prd.json\n    │               ├── meta/      # task.json and pipeline metadata\n    │               ├── input/     # Optional: input artefacts for the task\n    │               └── changes/   # Optional: output artefacts (pr_description.md, etc.)\n    └── e2e/                       # E2E pipeline tasks (same structure as production)\n```\n\n## Naming conventions\n\n- Task directories follow the pattern `gh-<issue-number>` (e.g. `gh-42`).\n- Tasks are grouped by environment (`production` / `e2e`), then by GitHub org, then by repo.\n- Example path: `tasks/production/AgentSDE/agent-core/gh-130/`\n\n## Dev workflow\n\n**There is no build system in this repo.** There is no `package.json`, no `Makefile`, and no build, test, or lint commands. All content is Markdown, JSON, or plain text.\n\n## Branch & PR rules\n\n- Branch name: `feat/<issue-number>-<short-slug>` or `fix/<issue-number>-<short-slug>`\n- PR body must include `Closes #<issue-number>`\n- Never commit directly to `master`\n","numLines":49,"startLine":1,"totalLines":49}}}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01HWLEouZoSLvYjgSEgjkEuf","type":"tool_result","content":"1\t# SM-0A: Inventory of `gh` CLI Call Sites\n2\t\n3\tInventory of every `gh` CLI invocation across `agent-core/.claude/skills/**` and\n4\t`agent-core-e2e/**`, mapped to the 20-tool MCP surface proposed in the\n5\tskills-mcp-platform plan.\n6\t\n7\t## Summary\n8\t\n9\t| Metric | Count |\n10\t|---|---|\n11\t| Total `gh` invocations | 79 |\n12\t| Unique skills with calls | 9 |\n13\t| Files affected | 11 |\n14\t| GAPs (no clean MCP replacement) | 7 distinct call shapes |\n15\t\n16\tBaseline from plan.md was ~84 calls / 14 skills. The 9-skill figure reflects\n17\tonly skills that actually invoke `gh` in their `SKILL.md` bodies; five\n18\tadditional skills (`product-manager`, `address-review`, `reply-to-pr-comment`,\n19\t`reply-to-issue-comment`, `deliver-implementation`) carry `role.md` prose\n20\ttelling the agent to use `--retry 3` on `gh api` calls — that prose was\n21\tcounted toward the ~14-skill baseline but represents guidance rather than\n22\tdistinct call sites. Actual invocation count (79) is within the expected\n23\t±10% of the 84-call baseline.\n24\t\n25\t## GAPs (flagged for Wave 1 review)\n26\t\n27\tThese call shapes do not map cleanly to any of the 20 MCP tools. Each is\n28\teither out-of-scope for the skills runtime (setup/cleanup scripts) or a\n29\tsignal that the tool surface may need a small addition.\n30\t\n31\t| # | Call shape | Why it's a GAP | Suggested resolution |\n32\t|---|---|---|---|\n33\t| G1 | `gh repo view --json nameWithOwner` | Resolving the current repo. Every skill calls this as a bootstrap step. | Add to `v1.context_get` (return `repo.owner`, `repo.name`, `repo.nameWithOwner`). |\n34\t| G2 | `gh api graphql ... pullRequestReviewThreads` (address-review line 127) | Listing review threads via GraphQL (IDs, resolution state). | `v1.review_thread_list` covers this — confirm payload shape matches. |\n35\t| G3 | `gh api graphql resolveReviewThread` (address-review line 141) | Mutation to resolve a review thread. | `v1.review_thread_resolve` — confirm it uses the thread node ID. |\n36\t| G4 | `gh run view <run-id> --log-failed` (reply-to-pr-comment line 128) | Fetching failed-check logs by workflow run ID (not check-run ID). | Partial overlap with `v1.check_run_logs`; confirm input accepts workflow-run IDs or add a sibling. |\n37\t| G5 | `gh api repos/.../issues/{n}/comments?per_page=50` (read comments) | Listing existing issue comments on an issue (PM, plan-and-propose, reply-to-issue-comment). | No `issue_comment_list` tool in the 20 — consider adding, or extend `v1.issue_get` to include comments. |\n38\t| G6 | `gh issue close` / `gh pr close` (e2e-noise-cleanup.sh lines 194, 203) | E2E cleanup script closing noise issues/PRs. | Out-of-scope for skills runtime; keep as CLI in ops script. Note as GAP only if we want cleanup to also run through MCP. |\n39\t| G7 | `gh api rate_limit` (e2e-noise-cleanup.sh line 245) | Preflight rate-limit check before cleanup sweep. | Out-of-scope; cleanup script concern. |\n40\t\n41\tAlso worth noting: PR-level review submission (`gh api .../pulls/{n}/reviews`\n42\tPOST in address-review line 160, review-pr line 82/197) maps to\n43\t`v1.review_submit` — confirm it supports both event types (APPROVE,\n44\tREQUEST_CHANGES, COMMENT) with inline threaded comments, which is the batched\n45\tshape review-pr depends on.\n46\t\n47\t---\n48\t\n49\t## Full Call-Site Table\n50\t\n51\t| File | Line | Command | Replacement Tool | Notes |\n52\t|---|---|---|---|---|\n53\t| agent-core/.claude/skills/implement-code/SKILL.md | 105 | `gh issue comment $ISSUE_NUMBER --repo $REPO --body \"...\"` | `v1.issue_comment` | |\n54\t| agent-core/.claude/skills/implement-code/SKILL.md | 127 | `gh pr create --title ... --body ... --base master --repo REPO` | `v1.pr_create` | |\n55\t| agent-core/.claude/skills/compound-learnings/SKILL.md | 52 | `gh pr list --head <branch> --json number,title,body` | `v1.pr_list` | |\n56\t| agent-core/.claude/skills/compound-learnings/SKILL.md | 108 | `gh pr view --json url` | `v1.pr_get` | Needs `url` field in payload. |\n57\t| agent-core/.claude/skills/compound-learnings/SKILL.md | 110 | `gh issue view ${ISSUE_NUMBER} --json title` | `v1.issue_get` | |\n58\t| agent-core/.claude/skills/compound-learnings/SKILL.md | 111 | `gh pr create \\ ...` | `v1.pr_create` | |\n59\t| agent-core/.claude/skills/compound-learnings/SKILL.md | 117 | `gh pr view --json number` | `v1.pr_get` | |\n60\t| agent-core/.claude/skills/compound-learnings/SKILL.md | 118 | `gh pr merge $PR --squash --delete-branch --auto` | `v1.pr_merge` | Confirm `squash`/`delete-branch`/`auto` flags supported. |\n61\t| agent-core/.claude/skills/address-review/SKILL.md | 42 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n62\t| agent-core/.claude/skills/address-review/SKILL.md | 51 | `gh api .../pulls/${PR}/reviews` | `v1.review_thread_list` | Lists reviews — may need dedicated list or part of `pr_get`. |\n63\t| agent-core/.claude/skills/address-review/SKILL.md | 52 | `gh api .../pulls/${PR}/comments` | `v1.review_thread_list` | Review comments. |\n64\t| agent-core/.claude/skills/address-review/SKILL.md | 122 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n65\t| agent-core/.claude/skills/address-review/SKILL.md | 127 | `gh api graphql pullRequestReviewThreads` | `v1.review_thread_list` | **GAP G2** — confirm GraphQL parity. |\n66\t| agent-core/.claude/skills/address-review/SKILL.md | 141 | `gh api graphql resolveReviewThread` | `v1.review_thread_resolve` | **GAP G3** |\n67\t| agent-core/.claude/skills/address-review/SKILL.md | 152 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n68\t| agent-core/.claude/skills/address-review/SKILL.md | 153 | `gh pr view ${PR} --json headRefOid` | `v1.pr_get_head_sha` | |\n69\t| agent-core/.claude/skills/address-review/SKILL.md | 160 | `gh api .../pulls/${PR}/reviews` (POST) | `v1.review_submit` | Batched review-reply submission. |\n70\t| agent-core/.claude/skills/address-review/SKILL.md | 168 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n71\t| agent-core/.claude/skills/address-review/SKILL.md | 169 | `gh api --method POST ...` | `v1.pr_comment` | Top-level PR comment. |\n72\t| agent-core/.claude/skills/product-manager/SKILL.md | 71 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n73\t| agent-core/.claude/skills/product-manager/SKILL.md | 80 | `gh issue list --label in-refinement --state open` | `v1.issue_list_by_label` | |\n74\t| agent-core/.claude/skills/product-manager/SKILL.md | 86 | `gh issue view ${ISSUE} --json number,title,body,labels` | `v1.issue_get` | |\n75\t| agent-core/.claude/skills/product-manager/SKILL.md | 109 | `gh api .../issues/${ISSUE}/comments?per_page=50` | `GAP` | **GAP G5** — no `issue_comment_list`. |\n76\t| agent-core/.claude/skills/product-manager/SKILL.md | 180 | `gh issue comment ${ISSUE} --body \"...\"` | `v1.issue_comment` | |\n77\t| agent-core/.claude/skills/product-manager/SKILL.md | 217 | `gh issue edit ${ISSUE} --body \"$PRD_BODY\"` | `v1.issue_edit_body` | |\n78\t| agent-core/.claude/skills/product-manager/SKILL.md | 249 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n79\t| agent-core/.claude/skills/product-manager/SKILL.md | 252 | `gh api .../issues/${ISSUE} --jq .node_id` | `v1.issue_get` | Ensure payload includes `node_id`. |\n80\t| agent-core/.claude/skills/product-manager/SKILL.md | 265 | `gh issue comment ${ISSUE} --body \"...\"` | `v1.issue_comment` | |\n81\t| agent-core/.claude/skills/product-manager/SKILL.md | 283 | `gh issue edit ${ISSUE} --remove-label in-refinement` | `v1.issue_remove_label` | |\n82\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 35 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n83\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 48 | `gh api .../pulls/comments/${COMMENT_ID}` | `v1.review_thread_list` | Fetch single review comment — may need dedicated tool. |\n84\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 54 | `gh api .../issues/comments/${COMMENT_ID}` | `GAP` | Single issue-comment fetch; no direct tool. |\n85\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 62 | `gh api .../issues/comments/${COMMENT_ID}` | `GAP` | Same as above. |\n86\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 67 | `gh api .../pulls/comments/${COMMENT_ID}` | `v1.review_thread_list` | |\n87\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 85 | `gh api --paginate .../pulls/${PR}/comments` | `v1.review_thread_list` | |\n88\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 91 | `gh api --paginate .../issues/${PR}/comments` | `GAP` | **GAP G5** — list PR issue comments. |\n89\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 107 | `gh api .../pulls/${PR}` | `v1.pr_get` | |\n90\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 124 | `gh pr checks ${PR}` | `v1.pr_checks` | |\n91\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 128 | `gh run view <run-id> --log-failed` | `v1.check_run_logs` | **GAP G4** — confirm workflow-run vs check-run. |\n92\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 184 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n93\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 185 | `gh api .../pulls/comments/${COMMENT_ID}/replies` | `v1.pr_comment` | Threaded reply — confirm tool supports `in_reply_to`. |\n94\t| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 191 | `gh pr comment ${PR} --body \"...\"` | `v1.pr_comment` | |\n95\t| agent-core/.claude/skills/review-pr/SKILL.md | 38 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n96\t| agent-core/.claude/skills/review-pr/SKILL.md | 46 | `gh pr diff <PR>` | `v1.pr_diff` | |\n97\t| agent-core/.claude/skills/review-pr/SKILL.md | 54 | `gh pr view <PR> --json title,body,author,headRef...` | `v1.pr_get` | |\n98\t| agent-core/.claude/skills/review-pr/SKILL.md | 63 | `gh pr view $PR --json body` | `v1.pr_get` | Used to parse Closes #n. |\n99\t| agent-core/.claude/skills/review-pr/SKILL.md | 72 | `gh issue view $ISSUE --json labels` | `v1.issue_get` | |\n100\t| agent-core/.claude/skills/review-pr/SKILL.md | 82 | `gh api .../pulls/${PR}/reviews` (POST) | `v1.review_submit` | Batched review submission. |\n101\t| agent-core/.claude/skills/review-pr/SKILL.md | 89 | `gh pr comment $PR --body \"Review Cap Reached\"` | `v1.pr_comment` | |\n102\t| agent-core/.claude/skills/review-pr/SKILL.md | 102 | `gh pr view <PR> --json author` | `v1.pr_get` | |\n103\t| agent-core/.claude/skills/review-pr/SKILL.md | 177 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n104\t| agent-core/.claude/skills/review-pr/SKILL.md | 197 | `gh api .../pulls/${PR}/reviews` (POST) | `v1.review_submit` | |\n105\t| agent-core/.claude/skills/deliver-implementation/SKILL.md | 141 | `gh pr view --json url` | `v1.pr_get` | |\n106\t| agent-core/.claude/skills/deliver-implementation/SKILL.md | 146 | `gh issue view <ISSUE> --json title` | `v1.issue_get` | |\n107\t| agent-core/.claude/skills/deliver-implementation/SKILL.md | 150 | `gh pr create ...` | `v1.pr_create` | |\n108\t| agent-core/.claude/skills/deliver-implementation/SKILL.md | 168 | `gh pr view --json number` | `v1.pr_get` | |\n109\t| agent-core/.claude/skills/deliver-implementation/SKILL.md | 173 | `gh pr comment <PR> --body \"...\"` | `v1.pr_comment` | |\n110\t| agent-core/.claude/skills/deliver-implementation/SKILL.md | 189 | `gh issue comment <ISSUE> --body \"PR opened\"` | `v1.issue_comment` | |\n111\t| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 34 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n112\t| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 43 | `gh api .../issues/comments/${COMMENT_ID}` | `GAP` | Single issue-comment fetch. |\n113\t| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 60 | `gh api .../issues/${ISSUE}/comments?per_page=10` | `GAP` | **GAP G5** |\n114\t| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 69 | `gh issue view ${ISSUE} --json body,labels,title,state` | `v1.issue_get` | |\n115\t| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 91 | `gh issue comment ${ISSUE} --body \"<answer>\"` | `v1.issue_comment` | |\n116\t| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 100 | `gh issue comment ${ISSUE} --body \"Noted ...\"` | `v1.issue_comment` | |\n117\t| agent-core/.claude/skills/plan-and-propose/SKILL.md | 70 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n118\t| agent-core/.claude/skills/plan-and-propose/SKILL.md | 79 | `gh issue view ${ISSUE} --json title,body,labels,assignees` | `v1.issue_get` | |\n119\t| agent-core/.claude/skills/plan-and-propose/SKILL.md | 95 | `gh issue comment ${ISSUE} --body \"Investigation Complete\"` | `v1.issue_comment` | |\n120\t| agent-core/.claude/skills/plan-and-propose/SKILL.md | 126 | `gh api .../issues/${ISSUE}/comments --paginate` | `GAP` | **GAP G5** |\n121\t| agent-core/.claude/skills/plan-and-propose/SKILL.md | 133 | `gh issue comment ${ISSUE} --body \"Plan Reused\"` | `v1.issue_comment` | |\n122\t| agent-core/.claude/skills/plan-and-propose/SKILL.md | 322 | `gh issue comment ${ISSUE} --body \"<comment_body>\"` | `v1.issue_comment` | |\n123\t| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 170 | `gh api .../issues/${n}/comments?per_page=100` | `GAP` | **GAP G5** (ops script; may stay on CLI). |\n124\t| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 177 | `gh api .../pulls/${n}/comments?per_page=100` | `v1.review_thread_list` | Ops script; keep on CLI acceptable. |\n125\t| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 183 | `gh api .../pulls/${n}/reviews?per_page=100` | `v1.review_thread_list` | Same. |\n126\t| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 194 | `gh issue close $n --repo $REPO --comment \"...\"` | `GAP` | **GAP G6** — no `v1.issue_close`. |\n127\t| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 203 | `gh pr close $n --repo $REPO` | `GAP` | **GAP G6** — no `v1.pr_close`. |\n128\t| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 245 | `gh api rate_limit` | `GAP` | **GAP G7** — ops preflight, out-of-scope. |\n129\t| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 272 | `gh issue list --repo $REPO --state open --limit 200` | `v1.issue_list_by_label` | Needs no-label variant — confirm or extend. |\n130\t| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 273 | `gh pr list --repo $REPO --state open --limit 200` | `v1.pr_list` | |\n131\t\n132\t---\n133\t\n134\t## Per-Skill Breakdown\n135\t\n136\t| Skill | Call sites | Distinct MCP tools used |\n137\t|---|---|---|\n138\t| implement-code | 2 | `v1.issue_comment`, `v1.pr_create` |\n139\t| compound-learnings | 6 | `v1.pr_list`, `v1.pr_get`, `v1.issue_get`, `v1.pr_create`, `v1.pr_merge` |\n140\t| address-review | 11 | `v1.context_get`, `v1.review_thread_list`, `v1.review_thread_resolve`, `v1.pr_get_head_sha`, `v1.review_submit`, `v1.pr_comment` |\n141\t| product-manager | 10 | `v1.context_get`, `v1.issue_list_by_label`, `v1.issue_get`, `v1.issue_comment`, `v1.issue_edit_body`, `v1.issue_remove_label` (+ GAP G5) |\n142\t| reply-to-pr-comment | 13 | `v1.context_get`, `v1.review_thread_list`, `v1.pr_get`, `v1.pr_checks`, `v1.check_run_logs`, `v1.pr_comment` (+ GAP G5) |\n143\t| review-pr | 10 | `v1.context_get`, `v1.pr_diff`, `v1.pr_get`, `v1.issue_get`, `v1.review_submit`, `v1.pr_comment` |\n144\t| deliver-implementation | 6 | `v1.pr_get`, `v1.issue_get`, `v1.pr_create`, `v1.pr_comment`, `v1.issue_comment` |\n145\t| reply-to-issue-comment | 6 | `v1.context_get`, `v1.issue_get`, `v1.issue_comment` (+ GAP G5) |\n146\t| plan-and-propose | 6 | `v1.context_get`, `v1.issue_get`, `v1.issue_comment` (+ GAP G5) |\n147\t| **e2e-noise-cleanup.sh (ops)** | 8 | `v1.issue_list_by_label`, `v1.pr_list`, `v1.review_thread_list` (+ GAPs G5/G6/G7 — ops script, out-of-scope) |\n148\t\n149\t## Notes on baseline reconciliation\n150\t\n151\t- Plan.md baseline: ~84 calls / 14 skills.\n152\t- Measured: 79 call sites / 9 skills (skills directory) + 1 ops script.\n153\t- The 5-skill delta is accounted for by `role.md` files in 5 skills that\n154\t  contain the prose line \"Use `--retry 3` on all `gh api` calls\" without\n155\t  any actual invocation. These were presumably counted as \"skill touches\n156\t  gh\" in the baseline but hold no replaceable call site.\n157\t- The 5-call delta (79 vs 84) is within normal noise; likely from\n158\t  counting `gh repo view --json nameWithOwner` as a single GAP vs. per-site.\n159\t"}]},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"113081f3-57e5-43db-92a4-fb03d3aad715","timestamp":"2026-04-24T15:16:18.113Z","tool_use_result":{"type":"text","file":{"filePath":"/home/agent/ai-agents-sde/.claude/worktrees/agent-core-artefacts/issue-611-agents-md/docs/planning/skills-mcp-platform/inventory.md","content":"# SM-0A: Inventory of `gh` CLI Call Sites\n\nInventory of every `gh` CLI invocation across `agent-core/.claude/skills/**` and\n`agent-core-e2e/**`, mapped to the 20-tool MCP surface proposed in the\nskills-mcp-platform plan.\n\n## Summary\n\n| Metric | Count |\n|---|---|\n| Total `gh` invocations | 79 |\n| Unique skills with calls | 9 |\n| Files affected | 11 |\n| GAPs (no clean MCP replacement) | 7 distinct call shapes |\n\nBaseline from plan.md was ~84 calls / 14 skills. The 9-skill figure reflects\nonly skills that actually invoke `gh` in their `SKILL.md` bodies; five\nadditional skills (`product-manager`, `address-review`, `reply-to-pr-comment`,\n`reply-to-issue-comment`, `deliver-implementation`) carry `role.md` prose\ntelling the agent to use `--retry 3` on `gh api` calls — that prose was\ncounted toward the ~14-skill baseline but represents guidance rather than\ndistinct call sites. Actual invocation count (79) is within the expected\n±10% of the 84-call baseline.\n\n## GAPs (flagged for Wave 1 review)\n\nThese call shapes do not map cleanly to any of the 20 MCP tools. Each is\neither out-of-scope for the skills runtime (setup/cleanup scripts) or a\nsignal that the tool surface may need a small addition.\n\n| # | Call shape | Why it's a GAP | Suggested resolution |\n|---|---|---|---|\n| G1 | `gh repo view --json nameWithOwner` | Resolving the current repo. Every skill calls this as a bootstrap step. | Add to `v1.context_get` (return `repo.owner`, `repo.name`, `repo.nameWithOwner`). |\n| G2 | `gh api graphql ... pullRequestReviewThreads` (address-review line 127) | Listing review threads via GraphQL (IDs, resolution state). | `v1.review_thread_list` covers this — confirm payload shape matches. |\n| G3 | `gh api graphql resolveReviewThread` (address-review line 141) | Mutation to resolve a review thread. | `v1.review_thread_resolve` — confirm it uses the thread node ID. |\n| G4 | `gh run view <run-id> --log-failed` (reply-to-pr-comment line 128) | Fetching failed-check logs by workflow run ID (not check-run ID). | Partial overlap with `v1.check_run_logs`; confirm input accepts workflow-run IDs or add a sibling. |\n| G5 | `gh api repos/.../issues/{n}/comments?per_page=50` (read comments) | Listing existing issue comments on an issue (PM, plan-and-propose, reply-to-issue-comment). | No `issue_comment_list` tool in the 20 — consider adding, or extend `v1.issue_get` to include comments. |\n| G6 | `gh issue close` / `gh pr close` (e2e-noise-cleanup.sh lines 194, 203) | E2E cleanup script closing noise issues/PRs. | Out-of-scope for skills runtime; keep as CLI in ops script. Note as GAP only if we want cleanup to also run through MCP. |\n| G7 | `gh api rate_limit` (e2e-noise-cleanup.sh line 245) | Preflight rate-limit check before cleanup sweep. | Out-of-scope; cleanup script concern. |\n\nAlso worth noting: PR-level review submission (`gh api .../pulls/{n}/reviews`\nPOST in address-review line 160, review-pr line 82/197) maps to\n`v1.review_submit` — confirm it supports both event types (APPROVE,\nREQUEST_CHANGES, COMMENT) with inline threaded comments, which is the batched\nshape review-pr depends on.\n\n---\n\n## Full Call-Site Table\n\n| File | Line | Command | Replacement Tool | Notes |\n|---|---|---|---|---|\n| agent-core/.claude/skills/implement-code/SKILL.md | 105 | `gh issue comment $ISSUE_NUMBER --repo $REPO --body \"...\"` | `v1.issue_comment` | |\n| agent-core/.claude/skills/implement-code/SKILL.md | 127 | `gh pr create --title ... --body ... --base master --repo REPO` | `v1.pr_create` | |\n| agent-core/.claude/skills/compound-learnings/SKILL.md | 52 | `gh pr list --head <branch> --json number,title,body` | `v1.pr_list` | |\n| agent-core/.claude/skills/compound-learnings/SKILL.md | 108 | `gh pr view --json url` | `v1.pr_get` | Needs `url` field in payload. |\n| agent-core/.claude/skills/compound-learnings/SKILL.md | 110 | `gh issue view ${ISSUE_NUMBER} --json title` | `v1.issue_get` | |\n| agent-core/.claude/skills/compound-learnings/SKILL.md | 111 | `gh pr create \\ ...` | `v1.pr_create` | |\n| agent-core/.claude/skills/compound-learnings/SKILL.md | 117 | `gh pr view --json number` | `v1.pr_get` | |\n| agent-core/.claude/skills/compound-learnings/SKILL.md | 118 | `gh pr merge $PR --squash --delete-branch --auto` | `v1.pr_merge` | Confirm `squash`/`delete-branch`/`auto` flags supported. |\n| agent-core/.claude/skills/address-review/SKILL.md | 42 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/address-review/SKILL.md | 51 | `gh api .../pulls/${PR}/reviews` | `v1.review_thread_list` | Lists reviews — may need dedicated list or part of `pr_get`. |\n| agent-core/.claude/skills/address-review/SKILL.md | 52 | `gh api .../pulls/${PR}/comments` | `v1.review_thread_list` | Review comments. |\n| agent-core/.claude/skills/address-review/SKILL.md | 122 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/address-review/SKILL.md | 127 | `gh api graphql pullRequestReviewThreads` | `v1.review_thread_list` | **GAP G2** — confirm GraphQL parity. |\n| agent-core/.claude/skills/address-review/SKILL.md | 141 | `gh api graphql resolveReviewThread` | `v1.review_thread_resolve` | **GAP G3** |\n| agent-core/.claude/skills/address-review/SKILL.md | 152 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/address-review/SKILL.md | 153 | `gh pr view ${PR} --json headRefOid` | `v1.pr_get_head_sha` | |\n| agent-core/.claude/skills/address-review/SKILL.md | 160 | `gh api .../pulls/${PR}/reviews` (POST) | `v1.review_submit` | Batched review-reply submission. |\n| agent-core/.claude/skills/address-review/SKILL.md | 168 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/address-review/SKILL.md | 169 | `gh api --method POST ...` | `v1.pr_comment` | Top-level PR comment. |\n| agent-core/.claude/skills/product-manager/SKILL.md | 71 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/product-manager/SKILL.md | 80 | `gh issue list --label in-refinement --state open` | `v1.issue_list_by_label` | |\n| agent-core/.claude/skills/product-manager/SKILL.md | 86 | `gh issue view ${ISSUE} --json number,title,body,labels` | `v1.issue_get` | |\n| agent-core/.claude/skills/product-manager/SKILL.md | 109 | `gh api .../issues/${ISSUE}/comments?per_page=50` | `GAP` | **GAP G5** — no `issue_comment_list`. |\n| agent-core/.claude/skills/product-manager/SKILL.md | 180 | `gh issue comment ${ISSUE} --body \"...\"` | `v1.issue_comment` | |\n| agent-core/.claude/skills/product-manager/SKILL.md | 217 | `gh issue edit ${ISSUE} --body \"$PRD_BODY\"` | `v1.issue_edit_body` | |\n| agent-core/.claude/skills/product-manager/SKILL.md | 249 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/product-manager/SKILL.md | 252 | `gh api .../issues/${ISSUE} --jq .node_id` | `v1.issue_get` | Ensure payload includes `node_id`. |\n| agent-core/.claude/skills/product-manager/SKILL.md | 265 | `gh issue comment ${ISSUE} --body \"...\"` | `v1.issue_comment` | |\n| agent-core/.claude/skills/product-manager/SKILL.md | 283 | `gh issue edit ${ISSUE} --remove-label in-refinement` | `v1.issue_remove_label` | |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 35 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 48 | `gh api .../pulls/comments/${COMMENT_ID}` | `v1.review_thread_list` | Fetch single review comment — may need dedicated tool. |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 54 | `gh api .../issues/comments/${COMMENT_ID}` | `GAP` | Single issue-comment fetch; no direct tool. |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 62 | `gh api .../issues/comments/${COMMENT_ID}` | `GAP` | Same as above. |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 67 | `gh api .../pulls/comments/${COMMENT_ID}` | `v1.review_thread_list` | |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 85 | `gh api --paginate .../pulls/${PR}/comments` | `v1.review_thread_list` | |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 91 | `gh api --paginate .../issues/${PR}/comments` | `GAP` | **GAP G5** — list PR issue comments. |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 107 | `gh api .../pulls/${PR}` | `v1.pr_get` | |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 124 | `gh pr checks ${PR}` | `v1.pr_checks` | |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 128 | `gh run view <run-id> --log-failed` | `v1.check_run_logs` | **GAP G4** — confirm workflow-run vs check-run. |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 184 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 185 | `gh api .../pulls/comments/${COMMENT_ID}/replies` | `v1.pr_comment` | Threaded reply — confirm tool supports `in_reply_to`. |\n| agent-core/.claude/skills/reply-to-pr-comment/SKILL.md | 191 | `gh pr comment ${PR} --body \"...\"` | `v1.pr_comment` | |\n| agent-core/.claude/skills/review-pr/SKILL.md | 38 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/review-pr/SKILL.md | 46 | `gh pr diff <PR>` | `v1.pr_diff` | |\n| agent-core/.claude/skills/review-pr/SKILL.md | 54 | `gh pr view <PR> --json title,body,author,headRef...` | `v1.pr_get` | |\n| agent-core/.claude/skills/review-pr/SKILL.md | 63 | `gh pr view $PR --json body` | `v1.pr_get` | Used to parse Closes #n. |\n| agent-core/.claude/skills/review-pr/SKILL.md | 72 | `gh issue view $ISSUE --json labels` | `v1.issue_get` | |\n| agent-core/.claude/skills/review-pr/SKILL.md | 82 | `gh api .../pulls/${PR}/reviews` (POST) | `v1.review_submit` | Batched review submission. |\n| agent-core/.claude/skills/review-pr/SKILL.md | 89 | `gh pr comment $PR --body \"Review Cap Reached\"` | `v1.pr_comment` | |\n| agent-core/.claude/skills/review-pr/SKILL.md | 102 | `gh pr view <PR> --json author` | `v1.pr_get` | |\n| agent-core/.claude/skills/review-pr/SKILL.md | 177 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/review-pr/SKILL.md | 197 | `gh api .../pulls/${PR}/reviews` (POST) | `v1.review_submit` | |\n| agent-core/.claude/skills/deliver-implementation/SKILL.md | 141 | `gh pr view --json url` | `v1.pr_get` | |\n| agent-core/.claude/skills/deliver-implementation/SKILL.md | 146 | `gh issue view <ISSUE> --json title` | `v1.issue_get` | |\n| agent-core/.claude/skills/deliver-implementation/SKILL.md | 150 | `gh pr create ...` | `v1.pr_create` | |\n| agent-core/.claude/skills/deliver-implementation/SKILL.md | 168 | `gh pr view --json number` | `v1.pr_get` | |\n| agent-core/.claude/skills/deliver-implementation/SKILL.md | 173 | `gh pr comment <PR> --body \"...\"` | `v1.pr_comment` | |\n| agent-core/.claude/skills/deliver-implementation/SKILL.md | 189 | `gh issue comment <ISSUE> --body \"PR opened\"` | `v1.issue_comment` | |\n| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 34 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 43 | `gh api .../issues/comments/${COMMENT_ID}` | `GAP` | Single issue-comment fetch. |\n| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 60 | `gh api .../issues/${ISSUE}/comments?per_page=10` | `GAP` | **GAP G5** |\n| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 69 | `gh issue view ${ISSUE} --json body,labels,title,state` | `v1.issue_get` | |\n| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 91 | `gh issue comment ${ISSUE} --body \"<answer>\"` | `v1.issue_comment` | |\n| agent-core/.claude/skills/reply-to-issue-comment/SKILL.md | 100 | `gh issue comment ${ISSUE} --body \"Noted ...\"` | `v1.issue_comment` | |\n| agent-core/.claude/skills/plan-and-propose/SKILL.md | 70 | `gh repo view --json nameWithOwner` | `v1.context_get` | **GAP G1** |\n| agent-core/.claude/skills/plan-and-propose/SKILL.md | 79 | `gh issue view ${ISSUE} --json title,body,labels,assignees` | `v1.issue_get` | |\n| agent-core/.claude/skills/plan-and-propose/SKILL.md | 95 | `gh issue comment ${ISSUE} --body \"Investigation Complete\"` | `v1.issue_comment` | |\n| agent-core/.claude/skills/plan-and-propose/SKILL.md | 126 | `gh api .../issues/${ISSUE}/comments --paginate` | `GAP` | **GAP G5** |\n| agent-core/.claude/skills/plan-and-propose/SKILL.md | 133 | `gh issue comment ${ISSUE} --body \"Plan Reused\"` | `v1.issue_comment` | |\n| agent-core/.claude/skills/plan-and-propose/SKILL.md | 322 | `gh issue comment ${ISSUE} --body \"<comment_body>\"` | `v1.issue_comment` | |\n| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 170 | `gh api .../issues/${n}/comments?per_page=100` | `GAP` | **GAP G5** (ops script; may stay on CLI). |\n| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 177 | `gh api .../pulls/${n}/comments?per_page=100` | `v1.review_thread_list` | Ops script; keep on CLI acceptable. |\n| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 183 | `gh api .../pulls/${n}/reviews?per_page=100` | `v1.review_thread_list` | Same. |\n| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 194 | `gh issue close $n --repo $REPO --comment \"...\"` | `GAP` | **GAP G6** — no `v1.issue_close`. |\n| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 203 | `gh pr close $n --repo $REPO` | `GAP` | **GAP G6** — no `v1.pr_close`. |\n| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 245 | `gh api rate_limit` | `GAP` | **GAP G7** — ops preflight, out-of-scope. |\n| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 272 | `gh issue list --repo $REPO --state open --limit 200` | `v1.issue_list_by_label` | Needs no-label variant — confirm or extend. |\n| agent-core-e2e/scripts/e2e-noise-cleanup.sh | 273 | `gh pr list --repo $REPO --state open --limit 200` | `v1.pr_list` | |\n\n---\n\n## Per-Skill Breakdown\n\n| Skill | Call sites | Distinct MCP tools used |\n|---|---|---|\n| implement-code | 2 | `v1.issue_comment`, `v1.pr_create` |\n| compound-learnings | 6 | `v1.pr_list`, `v1.pr_get`, `v1.issue_get`, `v1.pr_create`, `v1.pr_merge` |\n| address-review | 11 | `v1.context_get`, `v1.review_thread_list`, `v1.review_thread_resolve`, `v1.pr_get_head_sha`, `v1.review_submit`, `v1.pr_comment` |\n| product-manager | 10 | `v1.context_get`, `v1.issue_list_by_label`, `v1.issue_get`, `v1.issue_comment`, `v1.issue_edit_body`, `v1.issue_remove_label` (+ GAP G5) |\n| reply-to-pr-comment | 13 | `v1.context_get`, `v1.review_thread_list`, `v1.pr_get`, `v1.pr_checks`, `v1.check_run_logs`, `v1.pr_comment` (+ GAP G5) |\n| review-pr | 10 | `v1.context_get`, `v1.pr_diff`, `v1.pr_get`, `v1.issue_get`, `v1.review_submit`, `v1.pr_comment` |\n| deliver-implementation | 6 | `v1.pr_get`, `v1.issue_get`, `v1.pr_create`, `v1.pr_comment`, `v1.issue_comment` |\n| reply-to-issue-comment | 6 | `v1.context_get`, `v1.issue_get`, `v1.issue_comment` (+ GAP G5) |\n| plan-and-propose | 6 | `v1.context_get`, `v1.issue_get`, `v1.issue_comment` (+ GAP G5) |\n| **e2e-noise-cleanup.sh (ops)** | 8 | `v1.issue_list_by_label`, `v1.pr_list`, `v1.review_thread_list` (+ GAPs G5/G6/G7 — ops script, out-of-scope) |\n\n## Notes on baseline reconciliation\n\n- Plan.md baseline: ~84 calls / 14 skills.\n- Measured: 79 call sites / 9 skills (skills directory) + 1 ops script.\n- The 5-skill delta is accounted for by `role.md` files in 5 skills that\n  contain the prose line \"Use `--retry 3` on all `gh api` calls\" without\n  any actual invocation. These were presumably counted as \"skill touches\n  gh\" in the baseline but hold no replaceable call site.\n- The 5-call delta (79 vs 84) is within normal noise; likely from\n  counting `gh repo view --json nameWithOwner` as a single GAP vs. per-site.\n","numLines":159,"startLine":1,"totalLines":159}}}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01Nmi7Nbv9f6TRNVL3vrxni5","type":"tool_result","content":"(Bash completed with no output)","is_error":false}]},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"e77fce1b-e424-4356-811b-91f248b6ae7b","timestamp":"2026-04-24T15:16:19.220Z","tool_use_result":{"stdout":"","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01YDsyiCgH9csdqDPnYjGXEW","type":"message","role":"assistant","content":[{"type":"thinking","thinking":"The worktree doesn't have an AGENTS.md at the root. Let me check if there is one in the main agent-core-artefacts repo or if it's a different file.","signature":"EtECClsIDRgCKkA0iX+yQuPf6E7ab4chXi9PIwUz8h0YRghjnCStm0SioNysQMUcgGdqRtZgvloqJ1EQQkIp2aLzL+OrowjkYCr7MhFjbGF1ZGUtc29ubmV0LTQtNjgAEgwTSDfJB5XxL4ULt1AaDHjSjd+E9f9zynNxKyIwl76DyHPRxk61zySUJYQw+Eb2PHgkiAkmmn6eWQ7coHRISxdPe8uPFSEjNw+POF7DKqMBjUguhiyGUkO562lQAhjc8YAm7iygt7D1FOBjDX/YoLEHLGKV1mcByOaA9UUf0536Qca92yldRu+hkqypwe1W7HMp8Ye/yXQQ2QKYbzwD6ByebDwM1VTd2vrr8wd/h8oYqSfuH7a/O4HML2nEni+qopHavqM7qV8wtzaxUVSqRwvwjeMkxybvlISQLJdMKMGBeXk/cX0AFHG0SSamXP7+HTvC4BgB"}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":6742,"cache_read_input_tokens":29142,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":6742},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"b90ce5f3-5444-45a7-8bc0-209e88ce2121"}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01YDsyiCgH9csdqDPnYjGXEW","type":"message","role":"assistant","content":[{"type":"text","text":"Now let me check the current AGENTS.md in the agent-core-artefacts repo."}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":6742,"cache_read_input_tokens":29142,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":6742},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"00704fb6-fb37-4270-a629-08b42d2e9460"}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01YDsyiCgH9csdqDPnYjGXEW","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_019UVL1LG7TKE15teAyrTPZ3","name":"Bash","input":{"command":"find /home/agent/ai-agents-sde/.claude/worktrees/agent-core-artefacts/ -name \"AGENTS.md\" 2>/dev/null\n# Also check where the main agent-core-artefacts repo is\nfind /home/agent -maxdepth 4 -name \"AGENTS.md\" 2>/dev/null | head -20","description":"Find all AGENTS.md files"},"caller":{"type":"direct"}}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":6742,"cache_read_input_tokens":29142,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":6742},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"a75d9924-e47b-4f07-b926-39bd5a484acd"}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_019UVL1LG7TKE15teAyrTPZ3","type":"tool_result","content":"/home/agent/AgentSDE/testing/agent-core/AGENTS.md\n/home/agent/AgentSDE/ai-agents-sde/AGENTS.md\n/home/agent/AgentSDE/agent-core/AGENTS.md\n/home/agent/AgentSDE/agent-core-control-center/AGENTS.md\n/home/agent/AgentSDE/meridian-frontend/AGENTS.md\n/home/agent/AgentSDE/meridian-backend/AGENTS.md\n/home/agent/AgentSDE/agent-core-e2e/AGENTS.md\n/home/agent/openclaw/docs/zh-CN/AGENTS.md\n/home/agent/openclaw/AGENTS.md\n/home/agent/repos/ai-agents-sde/AGENTS.md\n/home/agent/repos/agent-core/AGENTS.md\n/home/agent/repos/agent-core-control-center/AGENTS.md\n/home/agent/repos/meridian-frontend/AGENTS.md\n/home/agent/repos/meridian-backend/AGENTS.md\n/home/agent/repos/agent-core-e2e/AGENTS.md\n/home/agent/.openclaw/workspace/AGENTS.md","is_error":false}]},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"5e00e574-a0f9-4699-a1b5-962bf0850e74","timestamp":"2026-04-24T15:16:36.033Z","tool_use_result":{"stdout":"/home/agent/AgentSDE/testing/agent-core/AGENTS.md\n/home/agent/AgentSDE/ai-agents-sde/AGENTS.md\n/home/agent/AgentSDE/agent-core/AGENTS.md\n/home/agent/AgentSDE/agent-core-control-center/AGENTS.md\n/home/agent/AgentSDE/meridian-frontend/AGENTS.md\n/home/agent/AgentSDE/meridian-backend/AGENTS.md\n/home/agent/AgentSDE/agent-core-e2e/AGENTS.md\n/home/agent/openclaw/docs/zh-CN/AGENTS.md\n/home/agent/openclaw/AGENTS.md\n/home/agent/repos/ai-agents-sde/AGENTS.md\n/home/agent/repos/agent-core/AGENTS.md\n/home/agent/repos/agent-core-control-center/AGENTS.md\n/home/agent/repos/meridian-frontend/AGENTS.md\n/home/agent/repos/meridian-backend/AGENTS.md\n/home/agent/repos/agent-core-e2e/AGENTS.md\n/home/agent/.openclaw/workspace/AGENTS.md","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01STypJXdbGCKFTCLwTkrVE9","type":"message","role":"assistant","content":[{"type":"thinking","thinking":"The `agent-core-artefacts` repo doesn't seem to have an AGENTS.md. The issue is about adding learnings from issue 611 (which was the `agent-core-artefacts` repo). \n\nLooking at the task setup:\n- REPO=AgentSDE/agent-core-artefacts\n- PROJECT_ROOT=/home/agent/ai-agents-sde/.claude/worktrees/agent-core-artefacts/issue-611-agents-md\n\nThe PROJECT_ROOT is a worktree of the agent-core-artefacts repo. \n\nThe worktree contains CLAUDE.md, README.md, docs, and tasks but no AGENTS.md. The skill instructions say to update `$PROJECT_ROOT/AGENTS.md`, but that path doesn't exist in the agent-core-artefacts worktree—so I need to check if AGENTS.md should actually be in the agent-core repo instead, since that's where this compound learnings skill runs. Looking at the branch name pattern `agents-md/issue-611-agents-md`, it seems this branch in agent-core-artefacts is specifically set up for AGENTS.md updates, which suggests the learnings should actually be recorded in the agent-core repo's AGENTS.md file since that's where the compound learnings skill runs as part of the pipeline. I need to verify whether AGENTS.md actually exists in the agent-core-artefacts repository and check the current state of that branch to understand what I'm working with.","signature":"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"}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":556,"cache_read_input_tokens":35884,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":556},"output_tokens":31,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"fd476f69-bcf7-4f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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01LuPQbaEgtRADKsHGH1eMb6","type":"tool_result","content":"806b590be docs: SM-0A inventory of gh call sites (#822)\n0436a9715 docs: add Skills → MCP Platform Tools plan (#821)\n4d0e69fbb docs: add Atlassian integration plan (Bitbucket + Jira) (#740)\nb4cd9969e chore: artefacts for issue 5992 (#820)\nade6b5048 chore: artefacts for issue 5990 (#819)\n6c611bb0a chore: artefacts for issue 5987 (#818)\nb2666f1dc chore: artefacts for issue 5972 (#817)\nc208b0197 chore: artefacts for issue 5973 (#816)\n9d08e8d90 chore: artefacts for issue 5971 (#815)\na7c591e51 chore: artefacts for issue 5965 (#814)\n---\nOn branch agents-md/issue-611\nYour branch is behind 'origin/master' by 3 commits, and can be fast-forwarded.\n  (use \"git pull\" to update your local branch)\n\nnothing to commit, working tree clean\n---\nagents-md/issue-611\nShell cwd was reset to /home/agent/AgentSDE/agent-core","is_error":false}]},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"8eb7dd87-f830-428a-9007-1511f1e9fbe6","timestamp":"2026-04-24T15:16:55.620Z","tool_use_result":{"stdout":"806b590be docs: SM-0A inventory of gh call sites (#822)\n0436a9715 docs: add Skills → MCP Platform Tools plan (#821)\n4d0e69fbb docs: add Atlassian integration plan (Bitbucket + Jira) (#740)\nb4cd9969e chore: artefacts for issue 5992 (#820)\nade6b5048 chore: artefacts for issue 5990 (#819)\n6c611bb0a chore: artefacts for issue 5987 (#818)\nb2666f1dc chore: artefacts for issue 5972 (#817)\nc208b0197 chore: artefacts for issue 5973 (#816)\n9d08e8d90 chore: artefacts for issue 5971 (#815)\na7c591e51 chore: artefacts for issue 5965 (#814)\n---\nOn branch agents-md/issue-611\nYour branch is behind 'origin/master' by 3 commits, and can be fast-forwarded.\n  (use \"git pull\" to update your local branch)\n\nnothing to commit, working tree clean\n---\nagents-md/issue-611","stderr":"\nShell cwd was reset to /home/agent/AgentSDE/agent-core","interrupted":false,"isImage":false,"noOutputExpected":false}}
{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01QauUFnp7dwsRgxZQ8XCMUY","type":"tool_result","content":"# Agent Configuration — agent-core\n\n## Purpose\n\nThis is the core orchestration server for the AgentSDE pipeline. It is a production NestJS application. Changes here affect the live webhook handler and all downstream agent runs.\n\n## Skills Available\n\n- `/orchestrate` — used for all issue work (plan + implement + PR)\n- `/review-pr` — used when reviewing PRs on this repo\n\n## Workflow\n\n1. Read the issue carefully — understand the impact on the webhook pipeline\n2. Read the relevant source files before making changes\n3. Run `npm run test` locally to verify unit tests pass\n4. Run `npm run lint` — zero warnings are allowed\n5. Create branch: `feat/<issue-number>-<slug>` or `fix/<issue-number>-<slug>`\n6. Commit with message: `feat(<scope>): <what>` or `fix(<scope>): <what>`\n7. Open PR with `Closes #<issue-number>` in the body\n8. Do not merge your own PR — CI must pass first\n9. When adding a new module, env var, or dev command, update CLAUDE.md in the same PR — `.env.example` is the canonical env vars reference; `src/` modules should all appear in the Key modules list\n10. For documentation-only PRs (no TS/JS modified), steps 3–4 (test and lint) may be skipped — state this explicitly in the pre-commit checks comment\n\n## Task Phases\n\n1. `plan` — read the issue and relevant source files, identify the change\n2. `implement` — make the change, write or update unit tests\n3. `test` — run `npm run test` and `npm run lint`, fix any failures\n4. `review` — open PR, wait for human approval gate\n5. `deploy` — handled by CI on merge to master\n\n## Artefacts\n\nTask state is written to `AgentSDE/agent-core-artefacts` repo, branch `AgentSDE/agent-core/<issue-number>`.\n\n## Directive System\n\n- `ALLOWED_DIRECTIVES` in `directive.dto.ts` is the single source of truth — `DirectiveValue` union type auto-derives from it\n- New directives must be wired in **two places**: `DirectiveService.applyDirective()` (internal API path) and `PhaseRouterService.route()` (GitHub webhook path); missing either creates a silent gap\n- Transient directives (`retry`, `restart`) must **not** overwrite `task.directive` — preserve the task's execution directive (`auto`/`careful`/`quick`)\n- Always post a GitHub feedback comment when a directive is rejected (terminal state, live process, unrecognised) — never drop silently\n- When shipping a new directive or pipeline behavior, add its AGENTS.md documentation in the same PR — deferred documentation accumulates as separate cleanup issues\n- Before closing an open PR on replan/restart, always post a \"superseded\" comment explaining the closure — silent PR closes are flagged by reviewers\n- Each directive that resets task state should have its own dedicated reset method (`resetForReplan`, `resetForRestart`) with distinct semantics — avoid sharing or overloading a single method with conditional branching\n- `DirectiveService.applyDirective()` does not enforce actor-level authorization — that responsibility lives at the GitHub webhook layer. In tests, document this boundary with a `TODO` and a reference issue rather than asserting service-level rejection\n\n### `skip-quality-gate` Directive\n- One-time bypass (`/agentsde skip-quality-gate`, legacy: `/agent skip-quality-gate`) of pre-PR quality gate before deliver phase. Sets `task.qualityGateOverride = true`; consumed atomically at start of next deliver phase (reset to `false` before invocation — cannot carry over). Does not skip code review. Confirmation comment posted on set. **Source:** `directive.service.ts` + `phase-router.service.ts`.","is_error":false}]},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"e21eeb3f-c3ae-4f66-9789-c332542656c6","timestamp":"2026-04-24T15:16:55.663Z","tool_use_result":{"stdout":"# Agent Configuration — agent-core\n\n## Purpose\n\nThis is the core orchestration server for the AgentSDE pipeline. It is a production NestJS application. Changes here affect the live webhook handler and all downstream agent runs.\n\n## Skills Available\n\n- `/orchestrate` — used for all issue work (plan + implement + PR)\n- `/review-pr` — used when reviewing PRs on this repo\n\n## Workflow\n\n1. Read the issue carefully — understand the impact on the webhook pipeline\n2. Read the relevant source files before making changes\n3. Run `npm run test` locally to verify unit tests pass\n4. Run `npm run lint` — zero warnings are allowed\n5. Create branch: `feat/<issue-number>-<slug>` or `fix/<issue-number>-<slug>`\n6. Commit with message: `feat(<scope>): <what>` or `fix(<scope>): <what>`\n7. Open PR with `Closes #<issue-number>` in the body\n8. Do not merge your own PR — CI must pass first\n9. When adding a new module, env var, or dev command, update CLAUDE.md in the same PR — `.env.example` is the canonical env vars reference; `src/` modules should all appear in the Key modules list\n10. For documentation-only PRs (no TS/JS modified), steps 3–4 (test and lint) may be skipped — state this explicitly in the pre-commit checks comment\n\n## Task Phases\n\n1. `plan` — read the issue and relevant source files, identify the change\n2. `implement` — make the change, write or update unit tests\n3. `test` — run `npm run test` and `npm run lint`, fix any failures\n4. `review` — open PR, wait for human approval gate\n5. `deploy` — handled by CI on merge to master\n\n## Artefacts\n\nTask state is written to `AgentSDE/agent-core-artefacts` repo, branch `AgentSDE/agent-core/<issue-number>`.\n\n## Directive System\n\n- `ALLOWED_DIRECTIVES` in `directive.dto.ts` is the single source of truth — `DirectiveValue` union type auto-derives from it\n- New directives must be wired in **two places**: `DirectiveService.applyDirective()` (internal API path) and `PhaseRouterService.route()` (GitHub webhook path); missing either creates a silent gap\n- Transient directives (`retry`, `restart`) must **not** overwrite `task.directive` — preserve the task's execution directive (`auto`/`careful`/`quick`)\n- Always post a GitHub feedback comment when a directive is rejected (terminal state, live process, unrecognised) — never drop silently\n- When shipping a new directive or pipeline behavior, add its AGENTS.md documentation in the same PR — deferred documentation accumulates as separate cleanup issues\n- Before closing an open PR on replan/restart, always post a \"superseded\" comment explaining the closure — silent PR closes are flagged by reviewers\n- Each directive that resets task state should have its own dedicated reset method (`resetForReplan`, `resetForRestart`) with distinct semantics — avoid sharing or overloading a single method with conditional branching\n- `DirectiveService.applyDirective()` does not enforce actor-level authorization — that responsibility lives at the GitHub webhook layer. In tests, document this boundary with a `TODO` and a reference issue rather than asserting service-level rejection\n\n### `skip-quality-gate` Directive\n- One-time bypass (`/agentsde skip-quality-gate`, legacy: `/agent skip-quality-gate`) of pre-PR quality gate before deliver phase. Sets `task.qualityGateOverride = true`; consumed atomically at start of next deliver phase (reset to `false` before invocation — cannot carry over). Does not skip code review. Confirmation comment posted on set. **Source:** `directive.service.ts` + `phase-router.service.ts`.","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01GeNeb8N2AVKqotwUC4mwdR","type":"message","role":"assistant","content":[{"type":"thinking","thinking":"Now I understand the landscape:\n\n1. Issue #611 was in the `agent-core-artefacts` repo and was about creating an inventory of `gh` CLI call sites mapped to MCP tools.\n2. PR #822 was merged and added `docs/planning/skills-mcp-platform/inventory.md`.\n3. The worktree at `/home/agent/ai-agents-sde/.claude/worktrees/agent-core-artefacts/issue-611-agents-md` is on branch `agents-md/issue-611`.\n4. This worktree does NOT have an AGENTS.md file (agent-core-artefacts doesn't have one).\n\n\n5. The current working directory is `/home/agent/AgentSDE/agent-core` which DOES have AGENTS.md, and that's the file the compound-learnings skill should be updating since it runs in the agent-core context.\n\nBut the skill instructions reference `$PROJECT_ROOT/AGENTS.md` where `PROJECT_ROOT` points to the agent-core-artefacts worktree, which doesn't have AGENTS.md. So I'm facing a mismatch: either I skip the update since the target doesn't exist, update the agent-core AGENTS.md where the skill knowledge actually lives, or create a new AGENTS.md in agent-core-artefacts. Given that issue 611 was about documenting `gh` CLI calls for MCP migration work done in the artefacts repo, but the learnings are fundamentally about agent-core patterns, I think the knowledge should go into the agent-core AGENTS.md file. The learnings from this task are pretty specific to the skills-mcp-platform migration—categorizing CLI tools by call shape, excluding ops scripts from MCP scope, and distinguishing actual invocations from guidance prose. These don't feel broadly applicable to future work in agent-core-artefacts, so I should check what the full AGENTS.md in agent-core already covers to see if there's anything worth adding there instead.\n\nActually, thinking about where to document this—agent-core-artefacts is a docs storage repo, and the task itself was straightforward inventory work with no real blockers or architectural patterns that would help future agents. The PR just added a clean enumeration of `gh` CLI calls mapped to MCP tools. There's nothing here that warrants a knowledge base entry, so I'll skip with that 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"}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":2456,"cache_read_input_tokens":36440,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":2456},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"75483ee6-59af-40f1-954d-e0e0e9607efd"}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01GeNeb8N2AVKqotwUC4mwdR","type":"message","role":"assistant","content":[{"type":"text","text":"Now I have enough context. Issue #611 was a straightforward inventory task — read skill files, count `gh` CLI invocations, and produce a mapping document. PR #822 was merged cleanly with no retries, blockers, or unexpected patterns. The work product is an inventory doc, not a behavioral pattern.\n\nThe `agent-core-artefacts` repo also has no `AGENTS.md`, so there's no knowledge base to update in the project root. The learnings from this task (count invocations by call shape, separate ops-script calls from skill calls) are specific to the skills-mcp-platform migration initiative and not generalizable patterns for future agents.\n\n<promise>SKIP: no learnings</promise>"}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":2456,"cache_read_input_tokens":36440,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":2456},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"79833d62-1a31-495e-b78f-c317d6c237da","uuid":"9225e1f8-4052-48fa-aa9d-3d090b419467"}
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