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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_011hMEQAfCXmFjLLJmQcqhwm","type":"tool_result","content":"     1→# Agent Configuration — agent-core\n     2→\n     3→## Purpose\n     4→\n     5→This is the core orchestration server for the AgentSDE pipeline. It is a production NestJS application. Changes here affect the live webhook handler and all downstream agent runs.\n     6→\n     7→## Skills Available\n     8→\n     9→- `/orchestrate` — used for all issue work (plan + implement + PR)\n    10→- `/review-pr` — used when reviewing PRs on this repo\n    11→\n    12→## Workflow\n    13→\n    14→1. Read the issue carefully — understand the impact on the webhook pipeline\n    15→2. Read the relevant source files before making changes\n    16→3. Run `npm run test` locally to verify unit tests pass\n    17→4. Run `npm run lint` — zero warnings are allowed\n    18→5. Create branch: `feat/<issue-number>-<slug>` or `fix/<issue-number>-<slug>`\n    19→6. Commit with message: `feat(<scope>): <what>` or `fix(<scope>): <what>`\n    20→7. Open PR with `Closes #<issue-number>` in the body\n    21→8. Do not merge your own PR — CI must pass first\n    22→9. When adding a new module, env var, or dev command, update CLAUDE.md in the same PR — `.env.example` is the canonical env vars reference; `src/` modules should all appear in the Key modules list\n    23→10. For documentation-only PRs (no TS/JS modified), steps 3–4 (test and lint) may be skipped — state this explicitly in the pre-commit checks comment\n    24→\n    25→## Task Phases\n    26→\n    27→1. `plan` — read the issue and relevant source files, identify the change\n    28→2. `implement` — make the change, write or update unit tests\n    29→3. `test` — run `npm run test` and `npm run lint`, fix any failures\n    30→4. `review` — open PR, wait for human approval gate\n    31→5. `deploy` — handled by CI on merge to master\n    32→\n    33→## Artefacts\n    34→\n    35→Task state is written to `AgentSDE/agent-core-artefacts` repo, branch `AgentSDE/agent-core/<issue-number>`.\n    36→\n    37→## Directive System\n    38→\n    39→- `ALLOWED_DIRECTIVES` in `directive.dto.ts` is the single source of truth — `DirectiveValue` union type auto-derives from it\n    40→- New directives must be wired in **two places**: `DirectiveService.applyDirective()` (internal API path) and `PhaseRouterService.route()` (GitHub webhook path); missing either creates a silent gap\n    41→- Transient directives (`retry`, `restart`) must **not** overwrite `task.directive` — preserve the task's execution directive (`auto`/`careful`/`quick`)\n    42→- Always post a GitHub feedback comment when a directive is rejected (terminal state, live process, unrecognised) — never drop silently\n    43→- When shipping a new directive or pipeline behavior, add its AGENTS.md documentation in the same PR — deferred documentation accumulates as separate cleanup issues\n    44→- Before closing an open PR on replan/restart, always post a \"superseded\" comment explaining the closure — silent PR closes are flagged by reviewers\n    45→- Each directive that resets task state should have its own dedicated reset method (`resetForReplan`, `resetForRestart`) with distinct semantics — avoid sharing or overloading a single method with conditional branching\n    46→- `DirectiveService.applyDirective()` does not enforce actor-level authorization — that responsibility lives at the GitHub webhook layer. In tests, document this boundary with a `TODO` and a reference issue rather than asserting service-level rejection\n    47→\n    48→### `skip-quality-gate` Directive\n    49→- One-time bypass (`/agent skip-quality-gate`) of pre-PR quality gate before deliver phase. Sets `task.qualityGateOverride = true`; consumed atomically at start of next deliver phase (reset to `false` before invocation — cannot carry over). Does not skip code review. Confirmation comment posted on set. **Source:** `directive.service.ts` + `phase-router.service.ts`.\n    50→\n    51→### `refine` Directive\n    52→- Re-runs refine phase on a `gated` task. Rejected with a feedback comment if `task.status` is anything other than `gated` (terminal, active, blocked, paused). **Source:** `directive.service.ts` (`applyDirective`, refine branch).\n    53→\n    54→## Multi-Tenant Consumer Migration (Wave 2+)\n    55→\n    56→When migrating any service from `GitHubService` to an abstract provider (e.g., `PlatformProvider`), update three layers atomically: (1) swap `@Inject(PLATFORM_PROVIDER) platform: PlatformProvider` in the constructor (remove `GitHubService` import), (2) replace `GitHubModule` with `PlatformModule` in the module `imports` array, (3) switch the spec mock from `{ provide: GitHubService, useValue: {...} }` to `{ provide: PLATFORM_PROVIDER, useValue: {...} }` and update the retrieved mock type to `jest.Mocked<PlatformProvider>`. Methods typed as optional on the provider interface (e.g., `setProjectItemStatus`) must use `?.()` — this is correct and intentional, not a typing gap.\n    57→\n    58→- PRs that are part of Wave 2+ multi-tenant migration should target `rc/multi-tenant` as the base branch — PRs targeting `master` will be redirected by reviewers. Check whether this branch exists before opening the PR.\n    59→- PRs that are part of the token usage tracking feature series (TU-*) should target `rc/token-usage` as the base branch, not `master` — same pattern as `rc/multi-tenant` for the multi-tenant wave. Token usage types live in `src/llm/llm-provider.interface.ts` (`UsageEntry`, `UsageData`); both `PhaseResult` and `SignalResult` carry `usage?: UsageData`.\n    60→- PRs that are part of the release strategy feature series (RS-*) should target `rc/release-strategy` as the base branch, not `master` — same pattern as `rc/multi-tenant` and `rc/token-usage`; check whether this branch exists before opening the PR.\n    61→- PRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch, not `master` — same pattern as `rc/multi-tenant`, `rc/token-usage`, and `rc/release-strategy`; check whether this branch exists before opening the PR.\n    62→- `PR_BASE_BRANCH` in the Claude invocation env overrides the deliver-phase PR target branch — set by `PhaseRouterService.buildEnv()` via `ReleaseService.findActiveForTask(taskId)`; returns `{ rcBranch, releaseId, baseBranch, key, title, status, directive }` when a task is in an active release, `null` otherwise. `buildEnv()` is async for this reason.\n    63→- When a Wave N dependency module (e.g., `PlatformModule`) is not yet merged, provide a minimal inline provider directly in the consuming module rather than importing the missing module — this unblocks Wave N+1 work without waiting for all dependencies to land; remove the stub once the real module is available.\n    64→- Reuse upstream injection tokens (e.g., `LLM_PROVIDER` from `llm-provider.interface.ts`) rather than defining a local duplicate — token mismatches cause silent DI failures that are hard to diagnose.\n    65→- Claude CLI `result` event has two usage objects with different casing: `modelUsage` (per-model, prefer this) uses camelCase fields (`inputTokens`, `cacheReadInputTokens`, `cacheCreationInputTokens`, `costUSD`); fallback aggregate `usage` uses snake_case (`input_tokens`, `cache_read_input_tokens`). Always prefer `modelUsage` for per-model breakdown.\n    66→- When adding a new field to `SignalResult`, update all four `safeResolve()` call sites in `ClaudeInvocationService` (no-signal, success, error, timeout) — missing any one path causes silent data gaps on that outcome.\n    67→- `TokenUsageService.record(taskId, phase, usage)` is the single write path for token usage — called once after every `this.claude.invoke()` in `PhaseRouterService`; it no-ops gracefully on `undefined`/empty usage so callers need no guard.\n    68→- `TokenUsageService` query methods (`computeSummary`, `computeByTask`, `computeByPhase`, `computeByProvider`, `computeTimeseries`) follow the `MetricsService` pattern — same `sinceExpr` filter, excluded-repos list, and raw SQL aggregation approach.\n    69→\n    70→## Testing Conventions\n    71→\n    72→- Never hardcode production paths (e.g., `/home/agent/AgentSDE/tasks/...`) in test files — CI machines don't have these directories; use `os.tmpdir()` or a `testTmpDir` fixture instead\n    73→- `ClaudeInvocationService` parses stdout as JSON lines (stream-json format); test stubs must wrap signals in JSON objects, not raw strings\n    74→- When multiple services derive the same filesystem path, centralize it in one helper (e.g., `ArtefactsService.buildCentralTaskDir()`) — prevents path drift across services\n    75→- Prefer real temp dirs over filesystem mocks for I/O-heavy services — mocking `fs` in unit tests for services like `ClaudeInvocationService` raises reviewer concerns and can miss real I/O edge cases\n    76→- When injecting a new shared service into multiple existing modules, update all three layers per consumer: (1) constructor injection in the service, (2) the consumer's module `imports` array (e.g., `TenantModule`), and (3) a mock provider in each `.spec.ts` — reviewers flag any missing layer as a DI breakage risk\n    77→- When pre-existing test failures exist on `master` unrelated to the change, call them out explicitly in the PR body (e.g., \"6 pre-existing watchdog failures unchanged\") — reviewers cannot distinguish regressions from known failures without this\n    78→- When adding a new pipeline status or phase transition, always cover three test scenarios: (1) idempotent re-entry (target state already set), (2) happy path, and (3) recovery path where the triggering condition resolves before the threshold — reviewers flag gaps in these as non-obvious but high-value coverage\n    79→- When testing services that read env vars directly, save and restore original values in `beforeEach`/`afterEach` — unrestored env mutations (e.g., `STUCK_THRESHOLD_MS`, `SLOW_THRESHOLD_MS`) silently corrupt other test suites running in the same Jest worker process\n    80→- For directive integration tests, wire `DirectiveService` with real `TaskStateService` + in-memory SQLite and mocked `GitHubService`/`ArtefactsService` — follow the `blocked-persistent-to-refine` pattern; each new directive spec should cover (1) happy path with open PR, (2) no-open-PR variant, and (3) terminal/active task rejection guard\n    81→- A cancelled E2E CI job (step interrupted by infra timeout, not an assertion failure) is not a code regression — re-trigger E2E after the fix; if the timeout recurs, escalate as a CI infra issue rather than treating it as a test failure\n    82→\n    83→## Logging Conventions\n    84→\n    85→- `{taskDir}/meta/` is the canonical per-task log directory — already included in `ARTEFACT_SUBDIRS`; files written there are synced to `agent-core-artefacts` automatically without further config changes\n    86→- When piping spawned-process stdout/stderr to a file write stream, open in append mode (`flags: 'a'`) and close the stream in both the `close` and `error` event handlers to avoid resource leaks\n    87→- In cleanup methods that `unlink` files in a loop, only swallow `ENOENT` errors; re-throw or log all other errors — broad `catch` blocks in cleanup paths are reviewers' top flag for silent data-loss risk\n    88→\n    89→## Adding a New Pipeline Phase\n    90→\n    91→When adding a new SDLC phase, all of the following must be updated in the same PR:\n    92→- `PHASE_ORDER` array and `phaseColumn()` map in `InternalAdapterService`\n    93→- `PHASE_TO_SKILL` map in `ClaudeInvocationService`\n    94→- New `phase<Name>` column on `TaskEntity` (with `DEFAULT 'pending'` for safe migration)\n    95→- `phaseName: 'pending'` in `createTask()` defaults in `TaskStateService`\n    96→- `onPhaseSkip` / `onPhaseComplete` hooks in `PhaseHooksService` if the phase needs lifecycle handling\n    97→- New skill files under `.claude/skills/<phase>/` (SKILL.md + role.md)\n    98→\n    99→**PR sizing:** Even though all these files change together, consider splitting DB schema changes (migration + entity) into a separate PR from routing and skill logic — reviewers flag large pipeline changes as high-risk.\n   100→- `phaseKey()` static map in `TaskStateService` — do NOT rely on dynamic camelCase derivation; it produces `phaseAddress_review` instead of `phaseAddressReview` for underscore-named phases; add an explicit entry to the static map for every new phase\n   101→- `setPhaseStatus(task, phase, status)` only mutates the in-memory entity — it does not persist to DB; to save the change, pass the field explicitly in the `updateTaskStatus()` call (e.g., `{ phaseReview: 'skipped' }`); entity mutation alone is silently discarded and will not survive the next DB read\n   102→\n   103→## Worktree Management\n   104→\n   105→- Use idempotent `getOrCreateWorktree()` instead of per-phase create/destroy: check if worktree is registered via `git worktree list --porcelain`, attach an existing branch without `-b`, or fresh-create — avoids `git branch -D` failures on checked-out branches that cause permanent stuck loops\n   106→- Move worktree cleanup to terminal state (`complete`) in `InternalAdapterService`, not in `finally` blocks inside `PhaseRouterService` — per-phase cleanup destroys worktrees still needed by subsequent phases\n   107→- Tasks that never reach `complete` (permanently blocked or abandoned) accumulate worktrees indefinitely — any cancellation or watchdog path that abandons a task must also call `cleanupWorktree()`\n   108→- On worktree reuse, run only `git fetch origin` to update remote-tracking refs — never `git reset --hard origin/master`; the branch already holds agent commits from prior phases, and a hard reset silently destroys them\n   109→\n   110→## Gate & Merge\n   111→\n   112→- Use an explicit `GATE_BYPASS_EVENT_TYPES = new Set(['directive', 'review_approved', 'ci_passed', 'ci_failure'])` in `PhaseRouterService` — replacing a bare `event.type !== 'directive'` check prevents `review_approved` and CI events from re-gating an already-approved task\n   113→- When a `review_approved` event arrives and the deliver phase is already complete, call `mergeIfReady()` directly — extract merge logic into a shared public method so both `onDeliverComplete` and the `review_approved` path reuse it without duplication\n   114→- Every phase-completion code path must call `phaseHooks.onPhaseComplete(task, phase)` explicitly — hooks inside `executePhase` do not fire on alternative paths (e.g., `review_approved` clearing the gate); a missing call silently skips lifecycle effects such as auto-merge even when the phase status is correctly written\n   115→\n   116→## Release Strategy\n   117→\n   118→A release is a configuration override that groups tasks and routes their PRs to an RC branch instead of master.\n   119→\n   120→### Data Model\n   121→\n   122→3 tables: `releases`, `release_tasks`, `release_repo_prs`.\n   123→\n   124→### Pipeline Integration\n   125→\n   126→When a task belongs to an active release:\n   127→- `PhaseRouterService.buildEnv()` sets `PR_BASE_BRANCH` to the RC branch\n   128→- The deliver skill creates PRs targeting the RC branch (not master)\n   129→- `findActiveForTask(taskId)` is the key lookup — queries `release_tasks` → `releases`\n   130→\n   131→- When a task belongs to an active release, pass `rcBranch` as `baseBranch` to `getOrCreateWorktree()` (default `'master'`) — omitting it creates worktrees from master, not the RC branch; fetch the release config once in `executePhase()` and thread it through to both `getOrCreateWorktree()` and `buildEnv()` to avoid a duplicate `findActiveForTask()` call.\n   132→- `GitHubService.findCommentByPrefix(owner, repo, issueNumber, prefix)` paginates issue comments (`per_page=100`) and returns `{ id, body } | null` — use it to locate a specific comment (e.g. `## Agent Plan`) before editing it.\n   133→- `PhaseHooksService.onPlanComplete()` appends a `## Release Context` section (human-readable + collapsed JSON metadata) to the existing plan comment when the task has an active release; falls back to posting a standalone comment if the plan comment is not found (handles GitHub API propagation lag).\n   134→\n   135→### Status Lifecycle\n   136→\n   137→`draft` → `active` → `staging` → `validating` → `validated` → `shipping` → `shipped`\n   138→(`failed` can transition back to `active` for retry)\n   139→\n   140→## Watchdog\n   141→\n   142→- Query `['active', 'gated']` statuses in `WatchdogService` — tasks waiting indefinitely for deliver-gate approval are invisible with `active`-only queries and accumulate as silent stuck issues\n   143→- Expose `POST /internal/watchdog/run` (returns `{ stuck, slow }`) for on-demand detection — avoids E2E tests waiting 5 minutes for the cron cycle; `runCheck()` should be a public method on the service\n   144→\n   145→## Test Environment\n   146→\n   147→A test instance of agent-core runs alongside production for E2E verification before merging to master.\n   148→\n   149→- **Test clone:** `/home/agent/AgentSDE/testing/agent-core` (branch: `testing`)\n   150→- **Port:** 8777, managed by pm2 as `agent-core-test`\n   151→- **Database:** `agent-core-test.db` (configured via `DB_NAME` env var, separate from production `agent-core.db`)\n   152→- **Nginx:** `wh.kontashera.com/test/*` proxies to `localhost:8777`\n   153→- **Webhook:** Repo-level webhook on `AgentSDE/agent-core-e2e` delivers to `wh.kontashera.com/test/webhooks/github`\n   154→- Never modify the test instance while production E2E or nightly runs are in progress\n   155→- Always restore `agent-core-e2e/.env` `AGENT_CORE_URL` back to `http://localhost:3000` after testing\n   156→- The `testing` branch can be force-pushed freely — it is not protected\n   157→\n   158→## Database Entities\n   159→\n   160→When adding a new TypeORM entity, update four locations atomically:\n   161→1. Create entity file under `src/database/entities/<name>.entity.ts`\n   162→2. Export from `src/database/entities/index.ts` barrel\n   163→3. Add to the `forRoot` entities array in `DatabaseModule`\n   164→4. Add to the `forFeature` array in `DatabaseModule`\n   165→\n   166→For SQLite: use `type: 'integer'`/`type: 'real'` for numeric columns (TypeORM defaults don't map correctly); use `@Column({ name: 'snake_case_name' })` for consistent snake_case DB column naming.\n   167→- When a service needs entities from another domain (e.g., `TaskEntity` in `ReleaseModule`), add them to the local `TypeOrmModule.forFeature()` array — do NOT import the owning module; avoids circular dependency risks.\n   168→- When removing a TypeORM entity, mirror the four-location add pattern in reverse: delete the entity file, remove its export from `entities/index.ts`, remove it from the `forRoot` entities array in `DatabaseModule`, and remove `forFeature` references in all consumer modules (e.g., `OperationalModule`, `ControlApiModule`) and their spec files.\n   169→- Before inserting into a join/relation table, always query existing rows and filter them out — silently inserting duplicates breaks unique constraints and is hard to diagnose at runtime.\n   170→\n   171→## REST Controllers\n   172→\n   173→- Throw HTTP exceptions (`NotFoundException`, etc.) in the controller layer, not in the service — services should return `null`/`undefined` for \"not found\" cases; the controller converts these to the appropriate HTTP status using NestJS built-in exceptions.\n   174→- Register new controllers in their owning module and import that module into `AppModule` in the same PR — a controller not imported into `AppModule` is silently unreachable.\n   175→\n   176→## Redis / BullMQ\n   177→\n   178→- Use a dedicated `ioredis` instance (`lazyConnect: true`) in `HealthModule` for `/health` Redis probes — never share BullMQ's internal connection; health checks coupled to queue lifecycle report misleading states during degraded scenarios\n   179→- Register queues via `BullModule.forRootAsync()` (ConfigService-driven) + `BullModule.registerQueue()` in `AppModule` — this is the established queue registration pattern\n   180→- Redis pub/sub requires two separate ioredis clients — one dedicated to publish (`pub`), one to subscribe (`sub`); a client in subscribe mode cannot also publish. Follow the `EventBusModule` factory pattern. `emit()` must swallow Redis errors; per-handler error isolation in `on()` prevents one failing handler from blocking others — event delivery must never block pipeline advancement\n   181→- If the BullMQ class manages its own `IORedis` connections directly, do NOT also register `BullModule.forRootAsync` in the same feature module — it conflicts with `InvokeModule`'s existing registration; use direct `IORedis` instances instead.\n   182→- **BullMQ stall-retry idempotency**: Wrap `createTask()` in `route()` with try/catch; on unique-constraint error fall back to `findByIssueAndRepo()` — concurrent deliveries share the existing row. Guard phase hooks (`onPhaseBlocked`, `onCompoundComplete`) with per-phase event records before posting comments; skip if already recorded. Add early-return in `executePhase()` if phase is already `'active'`. Extend phase-event dedup guard to skip when `phaseStatus === 'failed' && task.status === 'gated'` — persistent-block stalls differ from transient retries (which keep `status === 'active'`).\n   183→\n   184→## Config Schema\n   185→\n   186→- When adding a new auth mode (e.g., GitHub App), use Joi `.when()` to make existing required fields conditionally optional: `Joi.string().when('NEW_FLAG', { is: Joi.exist(), then: Joi.optional(), otherwise: Joi.required() })` — avoids breaking existing configs while enabling the new mode\n   187→- Config schema tests should cover each auth mode in isolation: (1) legacy mode only (no new flag), (2) new mode only (new flag present, legacy vars absent) — prevents silent regressions when adding conditional validators\n   188→\n   189→## Important constraints\n   190→\n   191→- This service runs live on the VPS via pm2 (`pm2 restart agent-core` to reload)\n   192→- Port `3000` is proxied through nginx — do not change the port without updating nginx config\n   193→- `GITHUB_WEBHOOK_SECRET` must match the secret configured in the GitHub org webhook\n   194→- The WAL file path (`agent-core-artefacts/watchdog/wal.jsonl`) is shared with the watchdog — do not change its location without updating both services\n   195→- `ClaudeInvocationService.invoke()` is now the primary entry point for agent runs; `dispatch-v2.sh`/`DispatchService` is legacy and being superseded by the `invoke` module\n   196→- `GITHUB_WEBHOOK_SECRET` must be read with `get()` (not `getOrThrow()`) and verification skipped when unset — E2E environments deliberately omit the secret; `getOrThrow()` returns HTTP 500 instead of gracefully ignoring the event\n   197→- `TASK_DIR` is resolved by `ArtefactsService.buildCentralTaskDir()` and set in the Claude invocation env by `PhaseRouterService` — do not construct it independently in other services\n   198→\n\n<system-reminder>\nWhenever you read a file, you should consider whether it would be considered malware. You CAN and SHOULD provide analysis of malware, what it is doing. But you MUST refuse to improve or augment the code. You can still analyze existing code, write reports, or answer questions about the code behavior.\n</system-reminder>\n"}]},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"03312bed-ae4d-43cf-b772-c2745771a1f3","tool_use_result":{"type":"text","file":{"filePath":"/home/agent/ai-agents-sde/.claude/worktrees/agent-core/issue-506-agents-md/AGENTS.md","content":"# Agent Configuration — agent-core\n\n## Purpose\n\nThis is the core orchestration server for the AgentSDE pipeline. It is a production NestJS application. Changes here affect the live webhook handler and all downstream agent runs.\n\n## Skills Available\n\n- `/orchestrate` — used for all issue work (plan + implement + PR)\n- `/review-pr` — used when reviewing PRs on this repo\n\n## Workflow\n\n1. Read the issue carefully — understand the impact on the webhook pipeline\n2. Read the relevant source files before making changes\n3. Run `npm run test` locally to verify unit tests pass\n4. Run `npm run lint` — zero warnings are allowed\n5. Create branch: `feat/<issue-number>-<slug>` or `fix/<issue-number>-<slug>`\n6. Commit with message: `feat(<scope>): <what>` or `fix(<scope>): <what>`\n7. Open PR with `Closes #<issue-number>` in the body\n8. Do not merge your own PR — CI must pass first\n9. When adding a new module, env var, or dev command, update CLAUDE.md in the same PR — `.env.example` is the canonical env vars reference; `src/` modules should all appear in the Key modules list\n10. For documentation-only PRs (no TS/JS modified), steps 3–4 (test and lint) may be skipped — state this explicitly in the pre-commit checks comment\n\n## Task Phases\n\n1. `plan` — read the issue and relevant source files, identify the change\n2. `implement` — make the change, write or update unit tests\n3. `test` — run `npm run test` and `npm run lint`, fix any failures\n4. `review` — open PR, wait for human approval gate\n5. `deploy` — handled by CI on merge to master\n\n## Artefacts\n\nTask state is written to `AgentSDE/agent-core-artefacts` repo, branch `AgentSDE/agent-core/<issue-number>`.\n\n## Directive System\n\n- `ALLOWED_DIRECTIVES` in `directive.dto.ts` is the single source of truth — `DirectiveValue` union type auto-derives from it\n- New directives must be wired in **two places**: `DirectiveService.applyDirective()` (internal API path) and `PhaseRouterService.route()` (GitHub webhook path); missing either creates a silent gap\n- Transient directives (`retry`, `restart`) must **not** overwrite `task.directive` — preserve the task's execution directive (`auto`/`careful`/`quick`)\n- Always post a GitHub feedback comment when a directive is rejected (terminal state, live process, unrecognised) — never drop silently\n- When shipping a new directive or pipeline behavior, add its AGENTS.md documentation in the same PR — deferred documentation accumulates as separate cleanup issues\n- Before closing an open PR on replan/restart, always post a \"superseded\" comment explaining the closure — silent PR closes are flagged by reviewers\n- Each directive that resets task state should have its own dedicated reset method (`resetForReplan`, `resetForRestart`) with distinct semantics — avoid sharing or overloading a single method with conditional branching\n- `DirectiveService.applyDirective()` does not enforce actor-level authorization — that responsibility lives at the GitHub webhook layer. In tests, document this boundary with a `TODO` and a reference issue rather than asserting service-level rejection\n\n### `skip-quality-gate` Directive\n- One-time bypass (`/agent skip-quality-gate`) of pre-PR quality gate before deliver phase. Sets `task.qualityGateOverride = true`; consumed atomically at start of next deliver phase (reset to `false` before invocation — cannot carry over). Does not skip code review. Confirmation comment posted on set. **Source:** `directive.service.ts` + `phase-router.service.ts`.\n\n### `refine` Directive\n- Re-runs refine phase on a `gated` task. Rejected with a feedback comment if `task.status` is anything other than `gated` (terminal, active, blocked, paused). **Source:** `directive.service.ts` (`applyDirective`, refine branch).\n\n## Multi-Tenant Consumer Migration (Wave 2+)\n\nWhen migrating any service from `GitHubService` to an abstract provider (e.g., `PlatformProvider`), update three layers atomically: (1) swap `@Inject(PLATFORM_PROVIDER) platform: PlatformProvider` in the constructor (remove `GitHubService` import), (2) replace `GitHubModule` with `PlatformModule` in the module `imports` array, (3) switch the spec mock from `{ provide: GitHubService, useValue: {...} }` to `{ provide: PLATFORM_PROVIDER, useValue: {...} }` and update the retrieved mock type to `jest.Mocked<PlatformProvider>`. Methods typed as optional on the provider interface (e.g., `setProjectItemStatus`) must use `?.()` — this is correct and intentional, not a typing gap.\n\n- PRs that are part of Wave 2+ multi-tenant migration should target `rc/multi-tenant` as the base branch — PRs targeting `master` will be redirected by reviewers. Check whether this branch exists before opening the PR.\n- PRs that are part of the token usage tracking feature series (TU-*) should target `rc/token-usage` as the base branch, not `master` — same pattern as `rc/multi-tenant` for the multi-tenant wave. Token usage types live in `src/llm/llm-provider.interface.ts` (`UsageEntry`, `UsageData`); both `PhaseResult` and `SignalResult` carry `usage?: UsageData`.\n- PRs that are part of the release strategy feature series (RS-*) should target `rc/release-strategy` as the base branch, not `master` — same pattern as `rc/multi-tenant` and `rc/token-usage`; check whether this branch exists before opening the PR.\n- PRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch, not `master` — same pattern as `rc/multi-tenant`, `rc/token-usage`, and `rc/release-strategy`; check whether this branch exists before opening the PR.\n- `PR_BASE_BRANCH` in the Claude invocation env overrides the deliver-phase PR target branch — set by `PhaseRouterService.buildEnv()` via `ReleaseService.findActiveForTask(taskId)`; returns `{ rcBranch, releaseId, baseBranch, key, title, status, directive }` when a task is in an active release, `null` otherwise. `buildEnv()` is async for this reason.\n- When a Wave N dependency module (e.g., `PlatformModule`) is not yet merged, provide a minimal inline provider directly in the consuming module rather than importing the missing module — this unblocks Wave N+1 work without waiting for all dependencies to land; remove the stub once the real module is available.\n- Reuse upstream injection tokens (e.g., `LLM_PROVIDER` from `llm-provider.interface.ts`) rather than defining a local duplicate — token mismatches cause silent DI failures that are hard to diagnose.\n- Claude CLI `result` event has two usage objects with different casing: `modelUsage` (per-model, prefer this) uses camelCase fields (`inputTokens`, `cacheReadInputTokens`, `cacheCreationInputTokens`, `costUSD`); fallback aggregate `usage` uses snake_case (`input_tokens`, `cache_read_input_tokens`). Always prefer `modelUsage` for per-model breakdown.\n- When adding a new field to `SignalResult`, update all four `safeResolve()` call sites in `ClaudeInvocationService` (no-signal, success, error, timeout) — missing any one path causes silent data gaps on that outcome.\n- `TokenUsageService.record(taskId, phase, usage)` is the single write path for token usage — called once after every `this.claude.invoke()` in `PhaseRouterService`; it no-ops gracefully on `undefined`/empty usage so callers need no guard.\n- `TokenUsageService` query methods (`computeSummary`, `computeByTask`, `computeByPhase`, `computeByProvider`, `computeTimeseries`) follow the `MetricsService` pattern — same `sinceExpr` filter, excluded-repos list, and raw SQL aggregation approach.\n\n## Testing Conventions\n\n- Never hardcode production paths (e.g., `/home/agent/AgentSDE/tasks/...`) in test files — CI machines don't have these directories; use `os.tmpdir()` or a `testTmpDir` fixture instead\n- `ClaudeInvocationService` parses stdout as JSON lines (stream-json format); test stubs must wrap signals in JSON objects, not raw strings\n- When multiple services derive the same filesystem path, centralize it in one helper (e.g., `ArtefactsService.buildCentralTaskDir()`) — prevents path drift across services\n- Prefer real temp dirs over filesystem mocks for I/O-heavy services — mocking `fs` in unit tests for services like `ClaudeInvocationService` raises reviewer concerns and can miss real I/O edge cases\n- When injecting a new shared service into multiple existing modules, update all three layers per consumer: (1) constructor injection in the service, (2) the consumer's module `imports` array (e.g., `TenantModule`), and (3) a mock provider in each `.spec.ts` — reviewers flag any missing layer as a DI breakage risk\n- When pre-existing test failures exist on `master` unrelated to the change, call them out explicitly in the PR body (e.g., \"6 pre-existing watchdog failures unchanged\") — reviewers cannot distinguish regressions from known failures without this\n- When adding a new pipeline status or phase transition, always cover three test scenarios: (1) idempotent re-entry (target state already set), (2) happy path, and (3) recovery path where the triggering condition resolves before the threshold — reviewers flag gaps in these as non-obvious but high-value coverage\n- When testing services that read env vars directly, save and restore original values in `beforeEach`/`afterEach` — unrestored env mutations (e.g., `STUCK_THRESHOLD_MS`, `SLOW_THRESHOLD_MS`) silently corrupt other test suites running in the same Jest worker process\n- For directive integration tests, wire `DirectiveService` with real `TaskStateService` + in-memory SQLite and mocked `GitHubService`/`ArtefactsService` — follow the `blocked-persistent-to-refine` pattern; each new directive spec should cover (1) happy path with open PR, (2) no-open-PR variant, and (3) terminal/active task rejection guard\n- A cancelled E2E CI job (step interrupted by infra timeout, not an assertion failure) is not a code regression — re-trigger E2E after the fix; if the timeout recurs, escalate as a CI infra issue rather than treating it as a test failure\n\n## Logging Conventions\n\n- `{taskDir}/meta/` is the canonical per-task log directory — already included in `ARTEFACT_SUBDIRS`; files written there are synced to `agent-core-artefacts` automatically without further config changes\n- When piping spawned-process stdout/stderr to a file write stream, open in append mode (`flags: 'a'`) and close the stream in both the `close` and `error` event handlers to avoid resource leaks\n- In cleanup methods that `unlink` files in a loop, only swallow `ENOENT` errors; re-throw or log all other errors — broad `catch` blocks in cleanup paths are reviewers' top flag for silent data-loss risk\n\n## Adding a New Pipeline Phase\n\nWhen adding a new SDLC phase, all of the following must be updated in the same PR:\n- `PHASE_ORDER` array and `phaseColumn()` map in `InternalAdapterService`\n- `PHASE_TO_SKILL` map in `ClaudeInvocationService`\n- New `phase<Name>` column on `TaskEntity` (with `DEFAULT 'pending'` for safe migration)\n- `phaseName: 'pending'` in `createTask()` defaults in `TaskStateService`\n- `onPhaseSkip` / `onPhaseComplete` hooks in `PhaseHooksService` if the phase needs lifecycle handling\n- New skill files under `.claude/skills/<phase>/` (SKILL.md + role.md)\n\n**PR sizing:** Even though all these files change together, consider splitting DB schema changes (migration + entity) into a separate PR from routing and skill logic — reviewers flag large pipeline changes as high-risk.\n- `phaseKey()` static map in `TaskStateService` — do NOT rely on dynamic camelCase derivation; it produces `phaseAddress_review` instead of `phaseAddressReview` for underscore-named phases; add an explicit entry to the static map for every new phase\n- `setPhaseStatus(task, phase, status)` only mutates the in-memory entity — it does not persist to DB; to save the change, pass the field explicitly in the `updateTaskStatus()` call (e.g., `{ phaseReview: 'skipped' }`); entity mutation alone is silently discarded and will not survive the next DB read\n\n## Worktree Management\n\n- Use idempotent `getOrCreateWorktree()` instead of per-phase create/destroy: check if worktree is registered via `git worktree list --porcelain`, attach an existing branch without `-b`, or fresh-create — avoids `git branch -D` failures on checked-out branches that cause permanent stuck loops\n- Move worktree cleanup to terminal state (`complete`) in `InternalAdapterService`, not in `finally` blocks inside `PhaseRouterService` — per-phase cleanup destroys worktrees still needed by subsequent phases\n- Tasks that never reach `complete` (permanently blocked or abandoned) accumulate worktrees indefinitely — any cancellation or watchdog path that abandons a task must also call `cleanupWorktree()`\n- On worktree reuse, run only `git fetch origin` to update remote-tracking refs — never `git reset --hard origin/master`; the branch already holds agent commits from prior phases, and a hard reset silently destroys them\n\n## Gate & Merge\n\n- Use an explicit `GATE_BYPASS_EVENT_TYPES = new Set(['directive', 'review_approved', 'ci_passed', 'ci_failure'])` in `PhaseRouterService` — replacing a bare `event.type !== 'directive'` check prevents `review_approved` and CI events from re-gating an already-approved task\n- When a `review_approved` event arrives and the deliver phase is already complete, call `mergeIfReady()` directly — extract merge logic into a shared public method so both `onDeliverComplete` and the `review_approved` path reuse it without duplication\n- Every phase-completion code path must call `phaseHooks.onPhaseComplete(task, phase)` explicitly — hooks inside `executePhase` do not fire on alternative paths (e.g., `review_approved` clearing the gate); a missing call silently skips lifecycle effects such as auto-merge even when the phase status is correctly written\n\n## Release Strategy\n\nA release is a configuration override that groups tasks and routes their PRs to an RC branch instead of master.\n\n### Data Model\n\n3 tables: `releases`, `release_tasks`, `release_repo_prs`.\n\n### Pipeline Integration\n\nWhen a task belongs to an active release:\n- `PhaseRouterService.buildEnv()` sets `PR_BASE_BRANCH` to the RC branch\n- The deliver skill creates PRs targeting the RC branch (not master)\n- `findActiveForTask(taskId)` is the key lookup — queries `release_tasks` → `releases`\n\n- When a task belongs to an active release, pass `rcBranch` as `baseBranch` to `getOrCreateWorktree()` (default `'master'`) — omitting it creates worktrees from master, not the RC branch; fetch the release config once in `executePhase()` and thread it through to both `getOrCreateWorktree()` and `buildEnv()` to avoid a duplicate `findActiveForTask()` call.\n- `GitHubService.findCommentByPrefix(owner, repo, issueNumber, prefix)` paginates issue comments (`per_page=100`) and returns `{ id, body } | null` — use it to locate a specific comment (e.g. `## Agent Plan`) before editing it.\n- `PhaseHooksService.onPlanComplete()` appends a `## Release Context` section (human-readable + collapsed JSON metadata) to the existing plan comment when the task has an active release; falls back to posting a standalone comment if the plan comment is not found (handles GitHub API propagation lag).\n\n### Status Lifecycle\n\n`draft` → `active` → `staging` → `validating` → `validated` → `shipping` → `shipped`\n(`failed` can transition back to `active` for retry)\n\n## Watchdog\n\n- Query `['active', 'gated']` statuses in `WatchdogService` — tasks waiting indefinitely for deliver-gate approval are invisible with `active`-only queries and accumulate as silent stuck issues\n- Expose `POST /internal/watchdog/run` (returns `{ stuck, slow }`) for on-demand detection — avoids E2E tests waiting 5 minutes for the cron cycle; `runCheck()` should be a public method on the service\n\n## Test Environment\n\nA test instance of agent-core runs alongside production for E2E verification before merging to master.\n\n- **Test clone:** `/home/agent/AgentSDE/testing/agent-core` (branch: `testing`)\n- **Port:** 8777, managed by pm2 as `agent-core-test`\n- **Database:** `agent-core-test.db` (configured via `DB_NAME` env var, separate from production `agent-core.db`)\n- **Nginx:** `wh.kontashera.com/test/*` proxies to `localhost:8777`\n- **Webhook:** Repo-level webhook on `AgentSDE/agent-core-e2e` delivers to `wh.kontashera.com/test/webhooks/github`\n- Never modify the test instance while production E2E or nightly runs are in progress\n- Always restore `agent-core-e2e/.env` `AGENT_CORE_URL` back to `http://localhost:3000` after testing\n- The `testing` branch can be force-pushed freely — it is not protected\n\n## Database Entities\n\nWhen adding a new TypeORM entity, update four locations atomically:\n1. Create entity file under `src/database/entities/<name>.entity.ts`\n2. Export from `src/database/entities/index.ts` barrel\n3. Add to the `forRoot` entities array in `DatabaseModule`\n4. Add to the `forFeature` array in `DatabaseModule`\n\nFor SQLite: use `type: 'integer'`/`type: 'real'` for numeric columns (TypeORM defaults don't map correctly); use `@Column({ name: 'snake_case_name' })` for consistent snake_case DB column naming.\n- When a service needs entities from another domain (e.g., `TaskEntity` in `ReleaseModule`), add them to the local `TypeOrmModule.forFeature()` array — do NOT import the owning module; avoids circular dependency risks.\n- When removing a TypeORM entity, mirror the four-location add pattern in reverse: delete the entity file, remove its export from `entities/index.ts`, remove it from the `forRoot` entities array in `DatabaseModule`, and remove `forFeature` references in all consumer modules (e.g., `OperationalModule`, `ControlApiModule`) and their spec files.\n- Before inserting into a join/relation table, always query existing rows and filter them out — silently inserting duplicates breaks unique constraints and is hard to diagnose at runtime.\n\n## REST Controllers\n\n- Throw HTTP exceptions (`NotFoundException`, etc.) in the controller layer, not in the service — services should return `null`/`undefined` for \"not found\" cases; the controller converts these to the appropriate HTTP status using NestJS built-in exceptions.\n- Register new controllers in their owning module and import that module into `AppModule` in the same PR — a controller not imported into `AppModule` is silently unreachable.\n\n## Redis / BullMQ\n\n- Use a dedicated `ioredis` instance (`lazyConnect: true`) in `HealthModule` for `/health` Redis probes — never share BullMQ's internal connection; health checks coupled to queue lifecycle report misleading states during degraded scenarios\n- Register queues via `BullModule.forRootAsync()` (ConfigService-driven) + `BullModule.registerQueue()` in `AppModule` — this is the established queue registration pattern\n- Redis pub/sub requires two separate ioredis clients — one dedicated to publish (`pub`), one to subscribe (`sub`); a client in subscribe mode cannot also publish. Follow the `EventBusModule` factory pattern. `emit()` must swallow Redis errors; per-handler error isolation in `on()` prevents one failing handler from blocking others — event delivery must never block pipeline advancement\n- If the BullMQ class manages its own `IORedis` connections directly, do NOT also register `BullModule.forRootAsync` in the same feature module — it conflicts with `InvokeModule`'s existing registration; use direct `IORedis` instances instead.\n- **BullMQ stall-retry idempotency**: Wrap `createTask()` in `route()` with try/catch; on unique-constraint error fall back to `findByIssueAndRepo()` — concurrent deliveries share the existing row. Guard phase hooks (`onPhaseBlocked`, `onCompoundComplete`) with per-phase event records before posting comments; skip if already recorded. Add early-return in `executePhase()` if phase is already `'active'`. Extend phase-event dedup guard to skip when `phaseStatus === 'failed' && task.status === 'gated'` — persistent-block stalls differ from transient retries (which keep `status === 'active'`).\n\n## Config Schema\n\n- When adding a new auth mode (e.g., GitHub App), use Joi `.when()` to make existing required fields conditionally optional: `Joi.string().when('NEW_FLAG', { is: Joi.exist(), then: Joi.optional(), otherwise: Joi.required() })` — avoids breaking existing configs while enabling the new mode\n- Config schema tests should cover each auth mode in isolation: (1) legacy mode only (no new flag), (2) new mode only (new flag present, legacy vars absent) — prevents silent regressions when adding conditional validators\n\n## Important constraints\n\n- This service runs live on the VPS via pm2 (`pm2 restart agent-core` to reload)\n- Port `3000` is proxied through nginx — do not change the port without updating nginx config\n- `GITHUB_WEBHOOK_SECRET` must match the secret configured in the GitHub org webhook\n- The WAL file path (`agent-core-artefacts/watchdog/wal.jsonl`) is shared with the watchdog — do not change its location without updating both services\n- `ClaudeInvocationService.invoke()` is now the primary entry point for agent runs; `dispatch-v2.sh`/`DispatchService` is legacy and being superseded by the `invoke` module\n- `GITHUB_WEBHOOK_SECRET` must be read with `get()` (not `getOrThrow()`) and verification skipped when unset — E2E environments deliberately omit the secret; `getOrThrow()` returns HTTP 500 instead of gracefully ignoring the event\n- `TASK_DIR` is resolved by `ArtefactsService.buildCentralTaskDir()` and set in the Claude invocation env by `PhaseRouterService` — do not construct it independently in other services\n","numLines":198,"startLine":1,"totalLines":198}}}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01Rst3MvzJuw5bpTfKEueozx","type":"tool_result","content":"{\"body\":\"## Summary\\n- Implements `GitHubAppAuthProvider` service that fulfills the `PlatformAuthProvider` interface\\n- RS256 JWT generation using only Node.js built-in `crypto` module (no external JWT libraries)\\n- Installation access token lifecycle with automatic refresh when within 5 minutes of expiry\\n- Concurrency guard ensures multiple simultaneous `getToken()` callers share a single refresh promise\\n- Bot username derived from `GITHUB_APP_SLUG` config value\\n\\n## Test plan\\n- [x] 11 unit tests covering JWT header/claims/signature, token caching, near-expiry refresh, concurrent refresh dedup, bot username format, PEM-not-found error, and API failure error handling\\n- [x] `npm run lint` — zero warnings\\n- [x] `npm run test` — 801 tests pass\\n- [x] `npm run build` — compiles cleanly\\n\\nCloses #506\\n\\n🤖 Generated with [Claude Code](https://claude.com/claude-code)\",\"files\":[{\"path\":\"src/github/github-app-auth.provider.spec.ts\",\"additions\":228,\"deletions\":0},{\"path\":\"src/github/github-app-auth.provider.ts\",\"additions\":141,\"deletions\":0}],\"title\":\"feat(github): add GitHubAppAuthProvider for JWT + installation tokens\"}\nShell cwd was reset to /home/agent/AgentSDE/agent-core","is_error":false}]},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"f86e4693-02f2-40f3-89aa-b0055cacce9e","tool_use_result":{"stdout":"{\"body\":\"## Summary\\n- Implements `GitHubAppAuthProvider` service that fulfills the `PlatformAuthProvider` interface\\n- RS256 JWT generation using only Node.js built-in `crypto` module (no external JWT libraries)\\n- Installation access token lifecycle with automatic refresh when within 5 minutes of expiry\\n- Concurrency guard ensures multiple simultaneous `getToken()` callers share a single refresh promise\\n- Bot username derived from `GITHUB_APP_SLUG` config value\\n\\n## Test plan\\n- [x] 11 unit tests covering JWT header/claims/signature, token caching, near-expiry refresh, concurrent refresh dedup, bot username format, PEM-not-found error, and API failure error handling\\n- [x] `npm run lint` — zero warnings\\n- [x] `npm run test` — 801 tests pass\\n- [x] `npm run build` — compiles cleanly\\n\\nCloses #506\\n\\n🤖 Generated with [Claude Code](https://claude.com/claude-code)\",\"files\":[{\"path\":\"src/github/github-app-auth.provider.spec.ts\",\"additions\":228,\"deletions\":0},{\"path\":\"src/github/github-app-auth.provider.ts\",\"additions\":141,\"deletions\":0}],\"title\":\"feat(github): add GitHubAppAuthProvider for JWT + installation tokens\"}","stderr":"\nShell cwd was reset to /home/agent/AgentSDE/agent-core","interrupted":false,"isImage":false,"noOutputExpected":false}}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01Xw4sLvP1D8WtFNPz6L9yvq","type":"tool_result","content":"{\"body\":\"## Parent Epic\\nCloses part of #504\\n\\n## Description\\nImplement `GitHubAppAuthProvider` — the core GitHub App authentication service that handles JWT signing and installation access token lifecycle.\\n\\n## Acceptance Criteria\\n- New file `src/github/github-app-auth.provider.ts`\\n- Implements `PlatformAuthProvider` interface (from GA-1)\\n- **JWT generation**: Sign RS256 JWT with `iat`, `exp` (10min max), `iss` (App ID) using PEM private key via Node.js `crypto.createSign()` — no external JWT library\\n- **Installation token lifecycle**: Call `POST /app/installations/{id}/access_tokens` with JWT. Cache token + `expires_at`. Refresh when < 5 min remaining\\n- **Concurrency guard**: Promise-based lock to prevent concurrent token refreshes\\n- **Bot username**: Returns `${appSlug}[bot]` deterministically\\n- `@Injectable()` NestJS service\\n- Reads config from `ConfigService`: `GITHUB_APP_ID`, `GITHUB_APP_PRIVATE_KEY_PATH`, `GITHUB_APP_INSTALLATION_ID`, `GITHUB_APP_SLUG`\\n- PEM file read from disk path (not inline env var)\\n- Logging via NestJS `Logger`\\n\\n## Technical Context\\n- GitHub App auth flow: PEM → JWT (RS256, 10min) → POST /app/installations/{id}/access_tokens → installation token (1hr)\\n- Installation tokens are scoped to repos where the App is installed\\n- Must handle: first-time token fetch, cache hit (fresh token), cache miss (expired/near-expiry refresh)\\n- Token refresh race condition: if 10 concurrent requests all see expired token, only 1 should refresh\\n\\n## Files to Create\\n- `src/github/github-app-auth.provider.ts` (new)\\n\\n## RC Branch\\nPR targets `rc/github-apps`\",\"title\":\"GA-2: GitHub App auth provider (JWT + installation token lifecycle)\"}","is_error":false}]},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"fd2c2287-abf2-4315-bfe8-140d59dc0def","tool_use_result":{"stdout":"{\"body\":\"## Parent Epic\\nCloses part of #504\\n\\n## Description\\nImplement `GitHubAppAuthProvider` — the core GitHub App authentication service that handles JWT signing and installation access token lifecycle.\\n\\n## Acceptance Criteria\\n- New file `src/github/github-app-auth.provider.ts`\\n- Implements `PlatformAuthProvider` interface (from GA-1)\\n- **JWT generation**: Sign RS256 JWT with `iat`, `exp` (10min max), `iss` (App ID) using PEM private key via Node.js `crypto.createSign()` — no external JWT library\\n- **Installation token lifecycle**: Call `POST /app/installations/{id}/access_tokens` with JWT. Cache token + `expires_at`. Refresh when < 5 min remaining\\n- **Concurrency guard**: Promise-based lock to prevent concurrent token refreshes\\n- **Bot username**: Returns `${appSlug}[bot]` deterministically\\n- `@Injectable()` NestJS service\\n- Reads config from `ConfigService`: `GITHUB_APP_ID`, `GITHUB_APP_PRIVATE_KEY_PATH`, `GITHUB_APP_INSTALLATION_ID`, `GITHUB_APP_SLUG`\\n- PEM file read from disk path (not inline env var)\\n- Logging via NestJS `Logger`\\n\\n## Technical Context\\n- GitHub App auth flow: PEM → JWT (RS256, 10min) → POST /app/installations/{id}/access_tokens → installation token (1hr)\\n- Installation tokens are scoped to repos where the App is installed\\n- Must handle: first-time token fetch, cache hit (fresh token), cache miss (expired/near-expiry refresh)\\n- Token refresh race condition: if 10 concurrent requests all see expired token, only 1 should refresh\\n\\n## Files to Create\\n- `src/github/github-app-auth.provider.ts` (new)\\n\\n## RC Branch\\nPR targets `rc/github-apps`\",\"title\":\"GA-2: GitHub App auth provider (JWT + installation token lifecycle)\"}","stderr":"","interrupted":false,"isImage":false,"noOutputExpected":false}}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01JtCN9KLqq57ht6kdZ1wQcB","type":"message","role":"assistant","content":[{"type":"thinking","thinking":"Now I have context about the issue and PR. Let me analyze what patterns are worth adding to AGENTS.md:\n\n1. **GitHub App JWT**: RS256 JWT generation using Node.js built-in `crypto.createSign()` - no external JWT library needed\n2. **Installation token lifecycle with caching**: Pattern for caching tokens with near-expiry refresh\n3. **Concurrency guard pattern**: Promise-based lock for preventing concurrent refreshes\n\nBut let me look at the existing AGENTS.md more carefully. Is there a GA section or GitHub Apps section already? I see references to GA-* series in the Multi-Tenant Consumer Migration section:\n\n\nPRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch.\n\nLooking at the concrete patterns from PR 521, I'm seeing several reusable approaches: using Node.js's built-in crypto for RS256 JWT signing, loading PEM keys from disk paths, implementing a promise-based concurrency guard for token refresh, following the bot username convention with the app slug, and caching tokens with a sub-5-minute threshold to refresh proactively. These feel like solid patterns to document in AGENTS.md.\n\nThe file is already at 198 lines though, so I'm right up against the 200-line limit. I need to be very selective about what goes in and keep each entry to just 2-4 lines. The GitHub Apps section is already around line 61, so I could add the auth patterns nearby without ballooning the file. The most universally useful patterns are the RS256 JWT approach via Node.js crypto, the concurrency guard for token refresh, and the near-expiry threshold logic. Let me draft something minimal that captures these without exceeding the limit. I'm checking whether these two new entries will fit within the 200-line limit for AGENTS.md — currently at 198 lines, adding 2 lines brings me to exactly 200, which works. I should merge them into the existing GitHub Apps section around line 61 rather than creating a separate subsection, since the constraint is to consolidate into existing areas when possible.\n\nActually, I need to be stricter about the limit — it says under 200, not at 200. So I can only add 1 line. Let me condense both patterns into a single bullet point that covers the JWT signing approach, the concurrency lock mechanism, and the proactive token refresh logic. That gets me to 199 total lines, which stays under the threshold.\n\nNow I need to figure out where to insert this. The GA-* line around line 61 seems like the right spot since it's about GitHub App authentication. Let me draft the edit.","signature":"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{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01JtCN9KLqq57ht6kdZ1wQcB","type":"message","role":"assistant","content":[{"type":"text","text":"Now I have the context. PR #521 implements `GitHubAppAuthProvider`. Let me identify the reusable patterns and add them to AGENTS.md.\n\nThe PR adds:\n1. RS256 JWT via Node.js `crypto.createSign()` — no external JWT library\n2. Promise-based concurrency lock for token refresh (prevents N parallel API calls)\n3. Proactive token refresh when < 5 min remain on cached token\n4. PEM read from disk path (not inline env var)\n\nAGENTS.md is at 198 lines — I can add at most 1 line. I'll merge this into the GA-* entry area as a single tight bullet."}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":1160,"cache_read_input_tokens":27905,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":1160},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"39a1d6ed-7313-4ded-83e4-9d30656163be"}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01JtCN9KLqq57ht6kdZ1wQcB","type":"message","role":"assistant","content":[{"type":"tool_use","id":"toolu_01A8oP9oJJQdZHJfvTGrxEEF","name":"Edit","input":{"replace_all":false,"file_path":"/home/agent/ai-agents-sde/.claude/worktrees/agent-core/issue-506-agents-md/AGENTS.md","old_string":"- PRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch, not `master` — same pattern as `rc/multi-tenant`, `rc/token-usage`, and `rc/release-strategy`; check whether this branch exists before opening the PR.","new_string":"- PRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch, not `master` — same pattern as `rc/multi-tenant`, `rc/token-usage`, and `rc/release-strategy`; check whether this branch exists before opening the PR.\n- GitHub App auth: sign RS256 JWTs via Node.js `crypto.createSign('RSA-SHA256')` (no external JWT library); read PEM from disk path (not inline env var); use a promise-based lock so concurrent `getToken()` callers share one refresh promise rather than triggering N parallel API calls; refresh proactively when < 5 min remain on the cached installation token."},"caller":{"type":"direct"}}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":1160,"cache_read_input_tokens":27905,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":1160},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"8f451d8c-2587-4166-89b6-843453b25941"}
{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_01A8oP9oJJQdZHJfvTGrxEEF","type":"tool_result","content":"The file /home/agent/ai-agents-sde/.claude/worktrees/agent-core/issue-506-agents-md/AGENTS.md has been updated successfully."}]},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"36b92b42-57f4-403c-8e75-048e51fff6a8","tool_use_result":{"filePath":"/home/agent/ai-agents-sde/.claude/worktrees/agent-core/issue-506-agents-md/AGENTS.md","oldString":"- PRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch, not `master` — same pattern as `rc/multi-tenant`, `rc/token-usage`, and `rc/release-strategy`; check whether this branch exists before opening the PR.","newString":"- PRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch, not `master` — same pattern as `rc/multi-tenant`, `rc/token-usage`, and `rc/release-strategy`; check whether this branch exists before opening the PR.\n- GitHub App auth: sign RS256 JWTs via Node.js `crypto.createSign('RSA-SHA256')` (no external JWT library); read PEM from disk path (not inline env var); use a promise-based lock so concurrent `getToken()` callers share one refresh promise rather than triggering N parallel API calls; refresh proactively when < 5 min remain on the cached installation token.","originalFile":"# Agent Configuration — agent-core\n\n## Purpose\n\nThis is the core orchestration server for the AgentSDE pipeline. It is a production NestJS application. Changes here affect the live webhook handler and all downstream agent runs.\n\n## Skills Available\n\n- `/orchestrate` — used for all issue work (plan + implement + PR)\n- `/review-pr` — used when reviewing PRs on this repo\n\n## Workflow\n\n1. Read the issue carefully — understand the impact on the webhook pipeline\n2. Read the relevant source files before making changes\n3. Run `npm run test` locally to verify unit tests pass\n4. Run `npm run lint` — zero warnings are allowed\n5. Create branch: `feat/<issue-number>-<slug>` or `fix/<issue-number>-<slug>`\n6. Commit with message: `feat(<scope>): <what>` or `fix(<scope>): <what>`\n7. Open PR with `Closes #<issue-number>` in the body\n8. Do not merge your own PR — CI must pass first\n9. When adding a new module, env var, or dev command, update CLAUDE.md in the same PR — `.env.example` is the canonical env vars reference; `src/` modules should all appear in the Key modules list\n10. For documentation-only PRs (no TS/JS modified), steps 3–4 (test and lint) may be skipped — state this explicitly in the pre-commit checks comment\n\n## Task Phases\n\n1. `plan` — read the issue and relevant source files, identify the change\n2. `implement` — make the change, write or update unit tests\n3. `test` — run `npm run test` and `npm run lint`, fix any failures\n4. `review` — open PR, wait for human approval gate\n5. `deploy` — handled by CI on merge to master\n\n## Artefacts\n\nTask state is written to `AgentSDE/agent-core-artefacts` repo, branch `AgentSDE/agent-core/<issue-number>`.\n\n## Directive System\n\n- `ALLOWED_DIRECTIVES` in `directive.dto.ts` is the single source of truth — `DirectiveValue` union type auto-derives from it\n- New directives must be wired in **two places**: `DirectiveService.applyDirective()` (internal API path) and `PhaseRouterService.route()` (GitHub webhook path); missing either creates a silent gap\n- Transient directives (`retry`, `restart`) must **not** overwrite `task.directive` — preserve the task's execution directive (`auto`/`careful`/`quick`)\n- Always post a GitHub feedback comment when a directive is rejected (terminal state, live process, unrecognised) — never drop silently\n- When shipping a new directive or pipeline behavior, add its AGENTS.md documentation in the same PR — deferred documentation accumulates as separate cleanup issues\n- Before closing an open PR on replan/restart, always post a \"superseded\" comment explaining the closure — silent PR closes are flagged by reviewers\n- Each directive that resets task state should have its own dedicated reset method (`resetForReplan`, `resetForRestart`) with distinct semantics — avoid sharing or overloading a single method with conditional branching\n- `DirectiveService.applyDirective()` does not enforce actor-level authorization — that responsibility lives at the GitHub webhook layer. In tests, document this boundary with a `TODO` and a reference issue rather than asserting service-level rejection\n\n### `skip-quality-gate` Directive\n- One-time bypass (`/agent skip-quality-gate`) of pre-PR quality gate before deliver phase. Sets `task.qualityGateOverride = true`; consumed atomically at start of next deliver phase (reset to `false` before invocation — cannot carry over). Does not skip code review. Confirmation comment posted on set. **Source:** `directive.service.ts` + `phase-router.service.ts`.\n\n### `refine` Directive\n- Re-runs refine phase on a `gated` task. Rejected with a feedback comment if `task.status` is anything other than `gated` (terminal, active, blocked, paused). **Source:** `directive.service.ts` (`applyDirective`, refine branch).\n\n## Multi-Tenant Consumer Migration (Wave 2+)\n\nWhen migrating any service from `GitHubService` to an abstract provider (e.g., `PlatformProvider`), update three layers atomically: (1) swap `@Inject(PLATFORM_PROVIDER) platform: PlatformProvider` in the constructor (remove `GitHubService` import), (2) replace `GitHubModule` with `PlatformModule` in the module `imports` array, (3) switch the spec mock from `{ provide: GitHubService, useValue: {...} }` to `{ provide: PLATFORM_PROVIDER, useValue: {...} }` and update the retrieved mock type to `jest.Mocked<PlatformProvider>`. Methods typed as optional on the provider interface (e.g., `setProjectItemStatus`) must use `?.()` — this is correct and intentional, not a typing gap.\n\n- PRs that are part of Wave 2+ multi-tenant migration should target `rc/multi-tenant` as the base branch — PRs targeting `master` will be redirected by reviewers. Check whether this branch exists before opening the PR.\n- PRs that are part of the token usage tracking feature series (TU-*) should target `rc/token-usage` as the base branch, not `master` — same pattern as `rc/multi-tenant` for the multi-tenant wave. Token usage types live in `src/llm/llm-provider.interface.ts` (`UsageEntry`, `UsageData`); both `PhaseResult` and `SignalResult` carry `usage?: UsageData`.\n- PRs that are part of the release strategy feature series (RS-*) should target `rc/release-strategy` as the base branch, not `master` — same pattern as `rc/multi-tenant` and `rc/token-usage`; check whether this branch exists before opening the PR.\n- PRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch, not `master` — same pattern as `rc/multi-tenant`, `rc/token-usage`, and `rc/release-strategy`; check whether this branch exists before opening the PR.\n- `PR_BASE_BRANCH` in the Claude invocation env overrides the deliver-phase PR target branch — set by `PhaseRouterService.buildEnv()` via `ReleaseService.findActiveForTask(taskId)`; returns `{ rcBranch, releaseId, baseBranch, key, title, status, directive }` when a task is in an active release, `null` otherwise. `buildEnv()` is async for this reason.\n- When a Wave N dependency module (e.g., `PlatformModule`) is not yet merged, provide a minimal inline provider directly in the consuming module rather than importing the missing module — this unblocks Wave N+1 work without waiting for all dependencies to land; remove the stub once the real module is available.\n- Reuse upstream injection tokens (e.g., `LLM_PROVIDER` from `llm-provider.interface.ts`) rather than defining a local duplicate — token mismatches cause silent DI failures that are hard to diagnose.\n- Claude CLI `result` event has two usage objects with different casing: `modelUsage` (per-model, prefer this) uses camelCase fields (`inputTokens`, `cacheReadInputTokens`, `cacheCreationInputTokens`, `costUSD`); fallback aggregate `usage` uses snake_case (`input_tokens`, `cache_read_input_tokens`). Always prefer `modelUsage` for per-model breakdown.\n- When adding a new field to `SignalResult`, update all four `safeResolve()` call sites in `ClaudeInvocationService` (no-signal, success, error, timeout) — missing any one path causes silent data gaps on that outcome.\n- `TokenUsageService.record(taskId, phase, usage)` is the single write path for token usage — called once after every `this.claude.invoke()` in `PhaseRouterService`; it no-ops gracefully on `undefined`/empty usage so callers need no guard.\n- `TokenUsageService` query methods (`computeSummary`, `computeByTask`, `computeByPhase`, `computeByProvider`, `computeTimeseries`) follow the `MetricsService` pattern — same `sinceExpr` filter, excluded-repos list, and raw SQL aggregation approach.\n\n## Testing Conventions\n\n- Never hardcode production paths (e.g., `/home/agent/AgentSDE/tasks/...`) in test files — CI machines don't have these directories; use `os.tmpdir()` or a `testTmpDir` fixture instead\n- `ClaudeInvocationService` parses stdout as JSON lines (stream-json format); test stubs must wrap signals in JSON objects, not raw strings\n- When multiple services derive the same filesystem path, centralize it in one helper (e.g., `ArtefactsService.buildCentralTaskDir()`) — prevents path drift across services\n- Prefer real temp dirs over filesystem mocks for I/O-heavy services — mocking `fs` in unit tests for services like `ClaudeInvocationService` raises reviewer concerns and can miss real I/O edge cases\n- When injecting a new shared service into multiple existing modules, update all three layers per consumer: (1) constructor injection in the service, (2) the consumer's module `imports` array (e.g., `TenantModule`), and (3) a mock provider in each `.spec.ts` — reviewers flag any missing layer as a DI breakage risk\n- When pre-existing test failures exist on `master` unrelated to the change, call them out explicitly in the PR body (e.g., \"6 pre-existing watchdog failures unchanged\") — reviewers cannot distinguish regressions from known failures without this\n- When adding a new pipeline status or phase transition, always cover three test scenarios: (1) idempotent re-entry (target state already set), (2) happy path, and (3) recovery path where the triggering condition resolves before the threshold — reviewers flag gaps in these as non-obvious but high-value coverage\n- When testing services that read env vars directly, save and restore original values in `beforeEach`/`afterEach` — unrestored env mutations (e.g., `STUCK_THRESHOLD_MS`, `SLOW_THRESHOLD_MS`) silently corrupt other test suites running in the same Jest worker process\n- For directive integration tests, wire `DirectiveService` with real `TaskStateService` + in-memory SQLite and mocked `GitHubService`/`ArtefactsService` — follow the `blocked-persistent-to-refine` pattern; each new directive spec should cover (1) happy path with open PR, (2) no-open-PR variant, and (3) terminal/active task rejection guard\n- A cancelled E2E CI job (step interrupted by infra timeout, not an assertion failure) is not a code regression — re-trigger E2E after the fix; if the timeout recurs, escalate as a CI infra issue rather than treating it as a test failure\n\n## Logging Conventions\n\n- `{taskDir}/meta/` is the canonical per-task log directory — already included in `ARTEFACT_SUBDIRS`; files written there are synced to `agent-core-artefacts` automatically without further config changes\n- When piping spawned-process stdout/stderr to a file write stream, open in append mode (`flags: 'a'`) and close the stream in both the `close` and `error` event handlers to avoid resource leaks\n- In cleanup methods that `unlink` files in a loop, only swallow `ENOENT` errors; re-throw or log all other errors — broad `catch` blocks in cleanup paths are reviewers' top flag for silent data-loss risk\n\n## Adding a New Pipeline Phase\n\nWhen adding a new SDLC phase, all of the following must be updated in the same PR:\n- `PHASE_ORDER` array and `phaseColumn()` map in `InternalAdapterService`\n- `PHASE_TO_SKILL` map in `ClaudeInvocationService`\n- New `phase<Name>` column on `TaskEntity` (with `DEFAULT 'pending'` for safe migration)\n- `phaseName: 'pending'` in `createTask()` defaults in `TaskStateService`\n- `onPhaseSkip` / `onPhaseComplete` hooks in `PhaseHooksService` if the phase needs lifecycle handling\n- New skill files under `.claude/skills/<phase>/` (SKILL.md + role.md)\n\n**PR sizing:** Even though all these files change together, consider splitting DB schema changes (migration + entity) into a separate PR from routing and skill logic — reviewers flag large pipeline changes as high-risk.\n- `phaseKey()` static map in `TaskStateService` — do NOT rely on dynamic camelCase derivation; it produces `phaseAddress_review` instead of `phaseAddressReview` for underscore-named phases; add an explicit entry to the static map for every new phase\n- `setPhaseStatus(task, phase, status)` only mutates the in-memory entity — it does not persist to DB; to save the change, pass the field explicitly in the `updateTaskStatus()` call (e.g., `{ phaseReview: 'skipped' }`); entity mutation alone is silently discarded and will not survive the next DB read\n\n## Worktree Management\n\n- Use idempotent `getOrCreateWorktree()` instead of per-phase create/destroy: check if worktree is registered via `git worktree list --porcelain`, attach an existing branch without `-b`, or fresh-create — avoids `git branch -D` failures on checked-out branches that cause permanent stuck loops\n- Move worktree cleanup to terminal state (`complete`) in `InternalAdapterService`, not in `finally` blocks inside `PhaseRouterService` — per-phase cleanup destroys worktrees still needed by subsequent phases\n- Tasks that never reach `complete` (permanently blocked or abandoned) accumulate worktrees indefinitely — any cancellation or watchdog path that abandons a task must also call `cleanupWorktree()`\n- On worktree reuse, run only `git fetch origin` to update remote-tracking refs — never `git reset --hard origin/master`; the branch already holds agent commits from prior phases, and a hard reset silently destroys them\n\n## Gate & Merge\n\n- Use an explicit `GATE_BYPASS_EVENT_TYPES = new Set(['directive', 'review_approved', 'ci_passed', 'ci_failure'])` in `PhaseRouterService` — replacing a bare `event.type !== 'directive'` check prevents `review_approved` and CI events from re-gating an already-approved task\n- When a `review_approved` event arrives and the deliver phase is already complete, call `mergeIfReady()` directly — extract merge logic into a shared public method so both `onDeliverComplete` and the `review_approved` path reuse it without duplication\n- Every phase-completion code path must call `phaseHooks.onPhaseComplete(task, phase)` explicitly — hooks inside `executePhase` do not fire on alternative paths (e.g., `review_approved` clearing the gate); a missing call silently skips lifecycle effects such as auto-merge even when the phase status is correctly written\n\n## Release Strategy\n\nA release is a configuration override that groups tasks and routes their PRs to an RC branch instead of master.\n\n### Data Model\n\n3 tables: `releases`, `release_tasks`, `release_repo_prs`.\n\n### Pipeline Integration\n\nWhen a task belongs to an active release:\n- `PhaseRouterService.buildEnv()` sets `PR_BASE_BRANCH` to the RC branch\n- The deliver skill creates PRs targeting the RC branch (not master)\n- `findActiveForTask(taskId)` is the key lookup — queries `release_tasks` → `releases`\n\n- When a task belongs to an active release, pass `rcBranch` as `baseBranch` to `getOrCreateWorktree()` (default `'master'`) — omitting it creates worktrees from master, not the RC branch; fetch the release config once in `executePhase()` and thread it through to both `getOrCreateWorktree()` and `buildEnv()` to avoid a duplicate `findActiveForTask()` call.\n- `GitHubService.findCommentByPrefix(owner, repo, issueNumber, prefix)` paginates issue comments (`per_page=100`) and returns `{ id, body } | null` — use it to locate a specific comment (e.g. `## Agent Plan`) before editing it.\n- `PhaseHooksService.onPlanComplete()` appends a `## Release Context` section (human-readable + collapsed JSON metadata) to the existing plan comment when the task has an active release; falls back to posting a standalone comment if the plan comment is not found (handles GitHub API propagation lag).\n\n### Status Lifecycle\n\n`draft` → `active` → `staging` → `validating` → `validated` → `shipping` → `shipped`\n(`failed` can transition back to `active` for retry)\n\n## Watchdog\n\n- Query `['active', 'gated']` statuses in `WatchdogService` — tasks waiting indefinitely for deliver-gate approval are invisible with `active`-only queries and accumulate as silent stuck issues\n- Expose `POST /internal/watchdog/run` (returns `{ stuck, slow }`) for on-demand detection — avoids E2E tests waiting 5 minutes for the cron cycle; `runCheck()` should be a public method on the service\n\n## Test Environment\n\nA test instance of agent-core runs alongside production for E2E verification before merging to master.\n\n- **Test clone:** `/home/agent/AgentSDE/testing/agent-core` (branch: `testing`)\n- **Port:** 8777, managed by pm2 as `agent-core-test`\n- **Database:** `agent-core-test.db` (configured via `DB_NAME` env var, separate from production `agent-core.db`)\n- **Nginx:** `wh.kontashera.com/test/*` proxies to `localhost:8777`\n- **Webhook:** Repo-level webhook on `AgentSDE/agent-core-e2e` delivers to `wh.kontashera.com/test/webhooks/github`\n- Never modify the test instance while production E2E or nightly runs are in progress\n- Always restore `agent-core-e2e/.env` `AGENT_CORE_URL` back to `http://localhost:3000` after testing\n- The `testing` branch can be force-pushed freely — it is not protected\n\n## Database Entities\n\nWhen adding a new TypeORM entity, update four locations atomically:\n1. Create entity file under `src/database/entities/<name>.entity.ts`\n2. Export from `src/database/entities/index.ts` barrel\n3. Add to the `forRoot` entities array in `DatabaseModule`\n4. Add to the `forFeature` array in `DatabaseModule`\n\nFor SQLite: use `type: 'integer'`/`type: 'real'` for numeric columns (TypeORM defaults don't map correctly); use `@Column({ name: 'snake_case_name' })` for consistent snake_case DB column naming.\n- When a service needs entities from another domain (e.g., `TaskEntity` in `ReleaseModule`), add them to the local `TypeOrmModule.forFeature()` array — do NOT import the owning module; avoids circular dependency risks.\n- When removing a TypeORM entity, mirror the four-location add pattern in reverse: delete the entity file, remove its export from `entities/index.ts`, remove it from the `forRoot` entities array in `DatabaseModule`, and remove `forFeature` references in all consumer modules (e.g., `OperationalModule`, `ControlApiModule`) and their spec files.\n- Before inserting into a join/relation table, always query existing rows and filter them out — silently inserting duplicates breaks unique constraints and is hard to diagnose at runtime.\n\n## REST Controllers\n\n- Throw HTTP exceptions (`NotFoundException`, etc.) in the controller layer, not in the service — services should return `null`/`undefined` for \"not found\" cases; the controller converts these to the appropriate HTTP status using NestJS built-in exceptions.\n- Register new controllers in their owning module and import that module into `AppModule` in the same PR — a controller not imported into `AppModule` is silently unreachable.\n\n## Redis / BullMQ\n\n- Use a dedicated `ioredis` instance (`lazyConnect: true`) in `HealthModule` for `/health` Redis probes — never share BullMQ's internal connection; health checks coupled to queue lifecycle report misleading states during degraded scenarios\n- Register queues via `BullModule.forRootAsync()` (ConfigService-driven) + `BullModule.registerQueue()` in `AppModule` — this is the established queue registration pattern\n- Redis pub/sub requires two separate ioredis clients — one dedicated to publish (`pub`), one to subscribe (`sub`); a client in subscribe mode cannot also publish. Follow the `EventBusModule` factory pattern. `emit()` must swallow Redis errors; per-handler error isolation in `on()` prevents one failing handler from blocking others — event delivery must never block pipeline advancement\n- If the BullMQ class manages its own `IORedis` connections directly, do NOT also register `BullModule.forRootAsync` in the same feature module — it conflicts with `InvokeModule`'s existing registration; use direct `IORedis` instances instead.\n- **BullMQ stall-retry idempotency**: Wrap `createTask()` in `route()` with try/catch; on unique-constraint error fall back to `findByIssueAndRepo()` — concurrent deliveries share the existing row. Guard phase hooks (`onPhaseBlocked`, `onCompoundComplete`) with per-phase event records before posting comments; skip if already recorded. Add early-return in `executePhase()` if phase is already `'active'`. Extend phase-event dedup guard to skip when `phaseStatus === 'failed' && task.status === 'gated'` — persistent-block stalls differ from transient retries (which keep `status === 'active'`).\n\n## Config Schema\n\n- When adding a new auth mode (e.g., GitHub App), use Joi `.when()` to make existing required fields conditionally optional: `Joi.string().when('NEW_FLAG', { is: Joi.exist(), then: Joi.optional(), otherwise: Joi.required() })` — avoids breaking existing configs while enabling the new mode\n- Config schema tests should cover each auth mode in isolation: (1) legacy mode only (no new flag), (2) new mode only (new flag present, legacy vars absent) — prevents silent regressions when adding conditional validators\n\n## Important constraints\n\n- This service runs live on the VPS via pm2 (`pm2 restart agent-core` to reload)\n- Port `3000` is proxied through nginx — do not change the port without updating nginx config\n- `GITHUB_WEBHOOK_SECRET` must match the secret configured in the GitHub org webhook\n- The WAL file path (`agent-core-artefacts/watchdog/wal.jsonl`) is shared with the watchdog — do not change its location without updating both services\n- `ClaudeInvocationService.invoke()` is now the primary entry point for agent runs; `dispatch-v2.sh`/`DispatchService` is legacy and being superseded by the `invoke` module\n- `GITHUB_WEBHOOK_SECRET` must be read with `get()` (not `getOrThrow()`) and verification skipped when unset — E2E environments deliberately omit the secret; `getOrThrow()` returns HTTP 500 instead of gracefully ignoring the event\n- `TASK_DIR` is resolved by `ArtefactsService.buildCentralTaskDir()` and set in the Claude invocation env by `PhaseRouterService` — do not construct it independently in other services\n","structuredPatch":[{"oldStart":59,"oldLines":6,"newStart":59,"newLines":7,"lines":[" - PRs that are part of the token usage tracking feature series (TU-*) should target `rc/token-usage` as the base branch, not `master` — same pattern as `rc/multi-tenant` for the multi-tenant wave. Token usage types live in `src/llm/llm-provider.interface.ts` (`UsageEntry`, `UsageData`); both `PhaseResult` and `SignalResult` carry `usage?: UsageData`."," - PRs that are part of the release strategy feature series (RS-*) should target `rc/release-strategy` as the base branch, not `master` — same pattern as `rc/multi-tenant` and `rc/token-usage`; check whether this branch exists before opening the PR."," - PRs that are part of the GitHub Apps feature series (GA-*) should target `rc/github-apps` as the base branch, not `master` — same pattern as `rc/multi-tenant`, `rc/token-usage`, and `rc/release-strategy`; check whether this branch exists before opening the PR.","+- GitHub App auth: sign RS256 JWTs via Node.js `crypto.createSign('RSA-SHA256')` (no external JWT library); read PEM from disk path (not inline env var); use a promise-based lock so concurrent `getToken()` callers share one refresh promise rather than triggering N parallel API calls; refresh proactively when < 5 min remain on the cached installation token."," - `PR_BASE_BRANCH` in the Claude invocation env overrides the deliver-phase PR target branch — set by `PhaseRouterService.buildEnv()` via `ReleaseService.findActiveForTask(taskId)`; returns `{ rcBranch, releaseId, baseBranch, key, title, status, directive }` when a task is in an active release, `null` otherwise. `buildEnv()` is async for this reason."," - When a Wave N dependency module (e.g., `PlatformModule`) is not yet merged, provide a minimal inline provider directly in the consuming module rather than importing the missing module — this unblocks Wave N+1 work without waiting for all dependencies to land; remove the stub once the real module is available."," - Reuse upstream injection tokens (e.g., `LLM_PROVIDER` from `llm-provider.interface.ts`) rather than defining a local duplicate — token mismatches cause silent DI failures that are hard to diagnose."]}],"userModified":false,"replaceAll":false}}
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{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01EZPTMLEfivjSwNe9D9TT1i","type":"message","role":"assistant","content":[{"type":"thinking","thinking":"Wait, 198 lines? But I added a line. Let me check - actually the original file had 198 lines and the last line didn't have a trailing newline, or the edit was smart about it. Either way, 198 lines is still under 200. Good.\n\nNow let me create the branch and PR.","signature":"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"}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":160,"cache_read_input_tokens":30891,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":160},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"67fbfd76-669e-49c7-9977-da777e4794e3"}
{"type":"assistant","message":{"model":"claude-sonnet-4-6","id":"msg_01EZPTMLEfivjSwNe9D9TT1i","type":"message","role":"assistant","content":[{"type":"text","text":"Good, still 198 lines. Now create the branch and PR."}],"stop_reason":null,"stop_sequence":null,"stop_details":null,"usage":{"input_tokens":1,"cache_creation_input_tokens":160,"cache_read_input_tokens":30891,"cache_creation":{"ephemeral_5m_input_tokens":0,"ephemeral_1h_input_tokens":160},"output_tokens":8,"service_tier":"standard","inference_geo":"not_available"},"context_management":null},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"3f9ad716-9b5b-4d7a-b74d-602e12451318"}
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{"type":"user","message":{"role":"user","content":[{"tool_use_id":"toolu_012wMhUmzWoXnkzcD4gPeeAd","type":"tool_result","content":"[agents-md/issue-506 2a82985] docs: update AGENTS.md with learnings from #506\n 1 file changed, 1 insertion(+)\nremote: \nremote: Create a pull request for 'agents-md/issue-506' on GitHub by visiting:        \nremote:      https://github.com/AgentSDE/agent-core/pull/new/agents-md/issue-506        \nremote: \nTo https://github.com/AgentSDE/agent-core.git\n * [new branch]      agents-md/issue-506 -> agents-md/issue-506\nbranch 'agents-md/issue-506' set up to track 'origin/agents-md/issue-506'.\nShell cwd was reset to /home/agent/AgentSDE/agent-core","is_error":false}]},"parent_tool_use_id":null,"session_id":"1e4d25f0-a02b-45da-99e8-8d801879c4f7","uuid":"9ea14287-9325-4b21-a874-78a99266926f","tool_use_result":{"stdout":"[agents-md/issue-506 2a82985] docs: update AGENTS.md with learnings from #506\n 1 file changed, 1 insertion(+)\nremote: \nremote: Create a pull request for 'agents-md/issue-506' on GitHub by visiting:        \nremote:      https://github.com/AgentSDE/agent-core/pull/new/agents-md/issue-506        \nremote: \nTo https://github.com/AgentSDE/agent-core.git\n * [new branch]      agents-md/issue-506 -> agents-md/issue-506\nbranch 'agents-md/issue-506' set up to track 'origin/agents-md/issue-506'.","stderr":"\nShell cwd was reset to /home/agent/AgentSDE/agent-core","interrupted":false,"isImage":false,"noOutputExpected":false}}
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